FMO05423.5prime Sequence
692 bp (692 high quality bases) assembled on 2008-08-25
> FMO05423.5prime
CAGTCGACATGGAGCGGCGCGTGAAGCTGAAGACGATCAATCCGCACATA
ACGTGCAAGATCTGCGGCGGCTACTTCATCGATGCCACCACGGTGACGGA
GTGTCTGCACACATTTTGCAAGAGTTGCCTGGTGAAGCACCTGGAGGAGA
AGAAGACCTGCCCCACCTGCGACAACATCATCCATCAGTCCCATCCCCTG
CAATACATCAGCTTCGATCGCACCATGCAGGACATTGTGTACAAACTGGT
GCCGAAACTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTTCTACAAGA
GCAGGAACATGCCGTGTCCCAAGGATATCACGCAGAACCACGAGGACGAC
AACGAGAAGGTGATGGACGCCCACGCCGAGTCCGACTTCCATCGCCTGGA
CGAGCAGGTGAACGTGTGCCTGGAGTGCATTAGCAATAACTTCAAGAACC
TGCAGAGGCGATTCATTCGCTGCAGCTCGCAGGCGACGATAACGCATCTC
AAGAAGCTGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAGTACAGAGA
GATCGACATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCACACGCTGA
AGTTCGTCTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGCTTCGGCTG
CAGTTTCGTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACCAT
FMO05423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 8..674 | 3335 | 100 | Plus |
l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 8..674 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16589245..16589530 | 266..551 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16589016..16589172 | 111..267 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 16589647..16589771 | 550..674 | 625 | 100 | Plus |
3L | 28110227 | 3L | 16588851..16588957 | 8..114 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 406..366 | 115 | 75.6 | Minus |
FMO05423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:51 Download gff for
FMO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 292..964 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:55 Download gff for
FMO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RA | 932..1604 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:09 Download gff for
FMO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 292..964 | 1..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:09 Download gff for
FMO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16589247..16589530 | 268..551 | 100 | -> | Plus |
3L | 16589649..16589774 | 552..678 | 98 | | Plus |
3L | 16588848..16588957 | 1..114 | 96 | -> | Plus |
3L | 16589020..16589172 | 115..267 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:51 Download gff for
FMO05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16582347..16582630 | 268..551 | 100 | -> | Plus |
arm_3L | 16582749..16582874 | 552..678 | 98 | | Plus |
arm_3L | 16581948..16582057 | 1..114 | 96 | -> | Plus |
arm_3L | 16582120..16582272 | 115..267 | 100 | -> | Plus |