FMO05428.5prime Sequence
788 bp (788 high quality bases) assembled on 2008-08-25
> FMO05428.5prime
CCTATACGAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGAC
CACCTGCGCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCC
GCAGACCGTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATC
ACATGTGCAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCAT
CTGCACAACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCC
CATCCTGTATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCA
CGCCGATTGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCA
GATCTTGCCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCT
GCAATCCGCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACA
AGGGCTACACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCC
AAGTCAGATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCAC
ACTGTTCCAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTA
AATTTCCCCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCA
CCAGCGGGCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAA
TGCCACAGGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCAC
CGCCCGAAAAGAAGAGCAAGGCAAGCTTTCTAGACCAT
FMO05428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED6-RE | 1617 | CG9473-RE | 458..1204 | 24..770 | 3735 | 100 | Plus |
| MED6-RD | 1814 | CG9473-RD | 655..1401 | 24..770 | 3735 | 100 | Plus |
| MED6-RC | 1770 | CG9473-RC | 611..1357 | 24..770 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9766444..9766727 | 770..487 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 9767177..9767358 | 205..24 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 9766948..9767122 | 380..206 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 9766788..9766893 | 486..381 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:00 has no hits.
FMO05428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:28 Download gff for
FMO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-RC | 603..1357 | 16..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:16 Download gff for
FMO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-RA | 628..1382 | 16..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:24 Download gff for
FMO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-RC | 603..1357 | 16..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:24 Download gff for
FMO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9766444..9766727 | 487..770 | 100 | <- | Minus |
| 3R | 9766788..9766893 | 381..486 | 100 | <- | Minus |
| 3R | 9766948..9767122 | 206..380 | 100 | <- | Minus |
| 3R | 9767177..9767366 | 16..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:28 Download gff for
FMO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5592166..5592449 | 487..770 | 100 | <- | Minus |
| arm_3R | 5592510..5592615 | 381..486 | 100 | <- | Minus |
| arm_3R | 5592670..5592844 | 206..380 | 100 | <- | Minus |
| arm_3R | 5592899..5593088 | 16..205 | 98 | | Minus |
