FMO05430.5prime Sequence
785 bp (785 high quality bases) assembled on 2008-08-25
> FMO05430.5prime
CAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGTTTGATCTC
AATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGACAGGTCGCA
CTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAAACAAATCG
CCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCTGGAAGAGT
CTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAATCGCGCTG
GCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCGCCAGTATC
GAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCGCCAACCAG
GTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACCGTCGTGGA
TATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGCCCAGGCAC
TGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGCTGGCCACT
GCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCGCTCAAGCG
AGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACACCATCAAGA
TTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACCAGTCGTTC
GGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGACAAAAGGC
AGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCAGCTTCTGG
CACAGCACAACAAGTACGCAAGCTTTCTAGACCAT
FMO05430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adf1-RE | 1668 | CG15845-RE | 199..957 | 9..767 | 3795 | 100 | Plus |
| Adf1-RC | 1675 | CG15845-RC | 206..964 | 9..767 | 3795 | 100 | Plus |
| Adf1-RB | 1795 | CG15845-RB | 326..1084 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6667072..6667374 | 465..767 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 6666719..6667013 | 171..465 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 6662595..6662757 | 9..171 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:40 has no hits.
FMO05430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:07 Download gff for
FMO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:18 Download gff for
FMO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RC | 200..973 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:09 Download gff for
FMO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 1..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:09 Download gff for
FMO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6662588..6662757 | 1..171 | 98 | -> | Plus |
| 2R | 6666720..6667013 | 172..465 | 100 | -> | Plus |
| 2R | 6667073..6667382 | 466..777 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:07 Download gff for
FMO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2550093..2550262 | 1..171 | 98 | -> | Plus |
| arm_2R | 2554225..2554518 | 172..465 | 100 | -> | Plus |
| arm_2R | 2554578..2554887 | 466..777 | 98 | | Plus |
