FMO05431.5prime Sequence
838 bp (838 high quality bases) assembled on 2008-08-25
> FMO05431.5prime
CAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGGAAGACGTT
TTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTACTCGCGGTG
CAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCACAATTCAG
ACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCGCCAATTCC
ACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAGGCGGAGCA
GAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCAGGAGCTGG
TGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCAGCAAGGCT
CTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAACCAGCAGAA
ACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGTAACAGCGT
TACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATCAGCAGGCG
AATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAGTTTCAAGT
GTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACACATACCCA
TGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGCTGGAGGAG
CACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACCTTGCAGCA
AATGGCGCATGAGGCTATGGAAAAACAGGAACTTCAGCCATGGAGCATGA
GTCGAGCGAGGGTTTCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCCAGGTAAGTGGTCATAATCTTAATCATATCAT
FMO05431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bigmax-RA | 954 | CG3350-RA | 49..819 | 1..769 | 3700 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27287785..27288188 | 551..148 | 1975 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27287501..27287720 | 769..551 | 1005 | 98.2 | Minus |
| 3R | 32079331 | 3R | 27288328..27288469 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:42 has no hits.
FMO05431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:33 Download gff for
FMO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bigmax-RA | 49..819 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:20 Download gff for
FMO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bigmax-RA | 18..788 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:51 Download gff for
FMO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bigmax-RA | 49..819 | 1..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:51 Download gff for
FMO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27288328..27288478 | 1..150 | 98 | | Minus |
| 3R | 27287501..27287719 | 552..769 | 98 | <- | Minus |
| 3R | 27287785..27288185 | 151..551 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:33 Download gff for
FMO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23113223..23113441 | 552..769 | 98 | <- | Minus |
| arm_3R | 23113507..23113907 | 151..551 | 99 | <- | Minus |
| arm_3R | 23114050..23114200 | 1..150 | 98 | | Minus |
