FMO05437.5prime Sequence
640 bp (485 high quality bases) assembled on 2008-08-25
> FMO05437.5prime
CATTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGATCGAAACT
GGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCACTGATCAG
CGGCCTTAATGGCAAATCCACATCGAATAGCAAAGAGATCATCTGCCCAG
ATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGGCGCAAACA
GCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTATGATGCCGA
CCTCAAGGTAACACAATATGCCGACCTAGACTAATTCCTGTCGGAGAACA
ACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCAGTGGCCTG
GGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCTCTTGGTCT
TGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCCCCATCCGACTGCA
TCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAACATTTTCG
TTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGACCCTTCTCCGA
CGAGGAGCTCAAGCCGCAGCCGATGATCAATAAGTCACGCAAGCAATTCG
TTCCAGATGAGCTCAGGACGACAAGTACTGGGCACGTCAC
FMO05437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp1-RK | 6855 | CG17888-RK | 1175..1805 | 9..638 | 3055 | 99 | Plus |
| Pdp1-RP | 6398 | CG17888-RP | 1175..1805 | 9..638 | 3055 | 99 | Plus |
| Pdp1-RB | 5065 | CG17888-RB | 2264..2894 | 9..638 | 3055 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7817437..7817662 | 492..267 | 1100 | 99.1 | Minus |
| 3L | 28110227 | 3L | 7818069..7818224 | 266..111 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 7816579..7816725 | 638..493 | 655 | 98 | Minus |
| 3L | 28110227 | 3L | 7853182..7853285 | 112..9 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:54 has no hits.
FMO05437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:43 Download gff for
FMO05437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RB | 2264..2896 | 9..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:40 Download gff for
FMO05437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RA | 412..1044 | 9..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:58 Download gff for
FMO05437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp1-RB | 2264..2896 | 9..640 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:58 Download gff for
FMO05437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7816577..7816725 | 493..640 | 97 | <- | Minus |
| 3L | 7817437..7817662 | 267..492 | 99 | <- | Minus |
| 3L | 7818069..7818223 | 112..266 | 100 | <- | Minus |
| 3L | 7853183..7853285 | 9..111 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:43 Download gff for
FMO05437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7809677..7809825 | 493..640 | 97 | <- | Minus |
| arm_3L | 7810537..7810762 | 267..492 | 99 | <- | Minus |
| arm_3L | 7811169..7811323 | 112..266 | 100 | <- | Minus |
| arm_3L | 7846283..7846385 | 9..111 | 99 | | Minus |
