FMO05439.5prime Sequence
927 bp (927 high quality bases) assembled on 2008-08-25
> FMO05439.5prime
CAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCATCGACAAG
GACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTGAAGGTGCC
CAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACATGGACGTGG
GCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGGTCTCGCTT
TCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAAATACCCAC
CGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCTCGGCGTAT
TCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTACCTCGGCG
GCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATTGTGCAAAA
GCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACTAAAGCTGG
AGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGCCTATCGAC
AAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACACAACATTGA
ATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGACGACAAGA
ATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATCAATACTAT
AACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGCTACCTGAA
GGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCCGCACAAGA
ACATGTGGGAGCTCAAGAAAGAATATCGCCACTACAAGACTGAAGAGAAG
AAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACTCGGAGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGGCGGGCCCAGGTAGTGGTCATAATCATATCA
TAATCATATCATAATCACAACTAGCTA
FMO05439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFbeta-RA | 1118 | CG6538-RA | 106..936 | 9..839 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10767163..10767699 | 545..9 | 2685 | 100 | Minus |
| 3R | 32079331 | 3R | 10766804..10767097 | 839..546 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:33 has no hits.
FMO05439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:05 Download gff for
FMO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFbeta-RA | 98..943 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:30 Download gff for
FMO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFbeta-RA | 240..1085 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:47 Download gff for
FMO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFbeta-RA | 98..943 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:47 Download gff for
FMO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10766804..10767097 | 546..839 | 100 | <- | Minus |
| 3R | 10767163..10767703 | 1..545 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:05 Download gff for
FMO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6592526..6592819 | 546..839 | 100 | <- | Minus |
| arm_3R | 6592885..6593425 | 1..545 | 99 | | Minus |
