FMO05440.5prime Sequence
869 bp (869 high quality bases) assembled on 2008-08-25
> FMO05440.5prime
CAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCA
CCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAA
CGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTT
CCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATAT
GGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGA
ACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATAC
CCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTC
GTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCT
CCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGG
CCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAG
CAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTG
CCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCTGTCCGATG
TGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAA
TACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCT
TCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCATTGAGCAAT
TGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGC
GATATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGAT
GGCAAGCTTTTTAGACATT
FMO05440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svp-RE | 3859 | CG11502-RE | 1230..2072 | 9..851 | 4215 | 100 | Plus |
| svp-RB | 3859 | CG11502-RB | 1230..2072 | 9..851 | 4215 | 100 | Plus |
| svp-RC | 2876 | CG11502-RC | 247..1089 | 9..851 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12294006..12294559 | 26..579 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 12300478..12300638 | 579..739 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 12300885..12300998 | 738..851 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:58 has no hits.
FMO05440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:40 Download gff for
FMO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RC | 240..1089 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:32 Download gff for
FMO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RB | 1223..2072 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:59 Download gff for
FMO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RC | 240..1089 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:59 Download gff for
FMO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12300479..12300636 | 580..737 | 100 | -> | Plus |
| 3R | 12300885..12300998 | 738..851 | 100 | | Plus |
| 3R | 12294008..12294559 | 28..579 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:40 Download gff for
FMO05440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8119730..8120281 | 28..579 | 100 | -> | Plus |
| arm_3R | 8126201..8126358 | 580..737 | 100 | -> | Plus |
| arm_3R | 8126607..8126720 | 738..851 | 100 | | Plus |
