FMO05441.5prime Sequence
869 bp (869 high quality bases) assembled on 2008-08-25
> FMO05441.5prime
CAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTACCGTGCTT
TACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTATACCAAAAA
CGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCTGGTGCTCG
AGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCCCCAGCGAA
TGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTCCTTATAAA
GAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGACGATCAGC
GCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGACCTCCGTG
AAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGCTGGAACCA
GATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGGCTCCAACT
ATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCATCCGGCGC
ATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCCAATGACTA
CCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAAGCAGTTCA
AGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGGGTCGCGGT
GAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGTCCCGCCAC
GGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCCGTCGCCGC
CTGTTCCGCAGAATGTTCCGTCGCCAGCAGCTTCCGCTCCTCCAGAGCCG
GCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAGGCCTACTA
TGCAAGCTTTCTAGACCAT
FMO05441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17118-RA | 979 | CG17118-RA | 45..887 | 9..851 | 4155 | 99.5 | Plus |
| Bug22-RA | 943 | CG5343-RA | 585..656 | 389..460 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10730696..10731264 | 283..851 | 2785 | 99.3 | Plus |
| 2L | 23513712 | 2L | 10730440..10730631 | 93..284 | 960 | 100 | Plus |
| 2L | 23513712 | 2L | 10730299..10730382 | 9..92 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 10430207..10430278 | 460..389 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:04 has no hits.
FMO05441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:02 Download gff for
FMO05441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..893 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:33 Download gff for
FMO05441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..893 | 1..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:44 Download gff for
FMO05441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..893 | 1..859 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:44 Download gff for
FMO05441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10730290..10730382 | 1..92 | 96 | -> | Plus |
| 2L | 10730440..10730631 | 93..284 | 100 | -> | Plus |
| 2L | 10730698..10731270 | 285..859 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:02 Download gff for
FMO05441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10730290..10730382 | 1..92 | 96 | -> | Plus |
| arm_2L | 10730440..10730631 | 93..284 | 100 | -> | Plus |
| arm_2L | 10730698..10731270 | 285..859 | 98 | | Plus |
