FMO05443.5prime Sequence
891 bp (891 high quality bases) assembled on 2008-08-25
> FMO05443.5prime
CAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAAGTATTCAG
AATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCTAAAACCGA
GCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTCGCCGAACC
TGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGCTGGATCTG
AACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTGGTCATCAA
CTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTTGGAGAAGA
TCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAAAGGTGTTC
CCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTCGGCAGGGG
ATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGCATTTCCGT
CCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTGCGGCAGCC
ATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACCTACACCAA
CATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAATCAAGCCA
GCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGAAGATCAAG
CTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAGTGCCGCAA
GCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAAGGTACTTA
AAGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCAAGGACCAT
GTGGCGCAGCTGAGCAGCAGTGATGGAGCACATTGCCGCGGGCTGCACGG
TGCCGCCGAACTCGACAGACCAAGCAAGCTTTCTAGACCAT
FMO05443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jra-RC | 1525 | CG2275-RC | 234..1102 | 7..873 | 4280 | 99.7 | Plus |
| Jra-RA | 1525 | CG2275-RA | 234..1102 | 7..873 | 4280 | 99.7 | Plus |
| Jra-RB | 1565 | CG2275-RB | 274..1142 | 7..873 | 4280 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10097265..10098133 | 7..873 | 4230 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:04 has no hits.
FMO05443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:45 Download gff for
FMO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-RB | 268..1149 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:36 Download gff for
FMO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-RA | 219..1100 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:02 Download gff for
FMO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-RB | 268..1149 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:02 Download gff for
FMO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10097259..10098140 | 1..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:45 Download gff for
FMO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5984764..5985645 | 1..882 | 98 | | Plus |
