FMO05444.5prime Sequence
904 bp (904 high quality bases) assembled on 2008-08-25
> FMO05444.5prime
CAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCGGTAGCGGA
GGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAACAAGGCCTG
GTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGACCTGGCTGC
TTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTCTGCCCAGC
AACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAGGCACTCGC
CTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGATCCGGGCG
CTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGATGGGCTAC
CGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGTATCAAGCC
GGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCGCAAGATGG
ATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACAATCAAAAG
TACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTGCACACGCT
CTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGACTGGCGCA
CCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGCTTTTTCTC
ACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATGCTGGCCAC
TCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACAGCTGAAGA
AGGAGGAGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCATCCAGTCGG
TGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACGGAGCCCTCG
TGCCGCACAAGATTCAACTCGCACTTCTATTCAGTCGCAAGCTTTCTAGA
CCAT
FMO05444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8314-RA | 1280 | CG8314-RA | 140..1019 | 8..886 | 4375 | 99.9 | Plus |
| CG5880-RA | 1526 | CG5880-RA | 587..662 | 409..484 | 200 | 84.2 | Plus |
| Dnz1-RA | 1949 | CG6627-RA | 705..806 | 404..505 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15990858..15991147 | 297..8 | 1450 | 100 | Minus |
| 2R | 25286936 | 2R | 15990452..15990674 | 518..296 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 15990169..15990382 | 732..519 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 15989944..15990100 | 886..731 | 735 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:16 has no hits.
FMO05444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:45 Download gff for
FMO05444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 133..1019 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:37 Download gff for
FMO05444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 129..1015 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:49 Download gff for
FMO05444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8314-RA | 133..1019 | 1..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:49 Download gff for
FMO05444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15990452..15990673 | 297..518 | 100 | <- | Minus |
| 2R | 15990859..15991150 | 1..296 | 98 | | Minus |
| 2R | 15989944..15990099 | 732..886 | 99 | <- | Minus |
| 2R | 15990170..15990382 | 519..731 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:45 Download gff for
FMO05444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11877449..11877604 | 732..886 | 99 | <- | Minus |
| arm_2R | 11877675..11877887 | 519..731 | 100 | <- | Minus |
| arm_2R | 11877957..11878178 | 297..518 | 100 | <- | Minus |
| arm_2R | 11878364..11878655 | 1..296 | 98 | | Minus |
