FMO05445.5prime Sequence
903 bp (903 high quality bases) assembled on 2008-08-25
> FMO05445.5prime
CAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCAAAAACCTG
CGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGAACCGATGG
GGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTTCCAGGAGA
GATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGCTGATTAAT
GGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACCGCCTACCT
GGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCAGCTGGTGA
ACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCTTGGCCTTC
AACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTACTGCTCGCA
GAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCCAGACCACA
TAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTTCGTACAGA
ATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACAATAAGTAA
CGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGAGTGGGTTA
CGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGTGGGCCGAG
TCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCACTCAGCAAT
GCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAAAAGCTATA
TAACCTGGCTGACAGCCACGTCAAACTTTTCCTGGAGCCCTGCAAGCGTT
GTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGGCGGGACCTGCGC
ACTCTAGAACCCTTCCACGAGGACTGCCGAAATTGCGCAGCTTTCTAGAC
CAT
FMO05445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED27-RA | 1080 | CG1245-RA | 68..946 | 9..886 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5655761..5656202 | 446..886 | 2160 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5655433..5655700 | 178..445 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 5655206..5655375 | 9..178 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:33:54 has no hits.
FMO05445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:24 Download gff for
FMO05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-RA | 64..954 | 5..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:39 Download gff for
FMO05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-RA | 58..948 | 5..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:36 Download gff for
FMO05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-RA | 64..954 | 5..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:36 Download gff for
FMO05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5655202..5655375 | 5..178 | 98 | -> | Plus |
| 3R | 5655434..5655700 | 179..445 | 100 | -> | Plus |
| 3R | 5655761..5656210 | 446..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:24 Download gff for
FMO05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1480924..1481097 | 5..178 | 98 | -> | Plus |
| arm_3R | 1481156..1481422 | 179..445 | 100 | -> | Plus |
| arm_3R | 1481483..1481932 | 446..894 | 98 | | Plus |
