FMO05446.5prime Sequence
904 bp (904 high quality bases) assembled on 2008-08-25
> FMO05446.5prime
CAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCCACATACCC
AGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAACCTGGAGGA
GGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTATGTGGCCA
TGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCGAGTTCCGC
TCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTCGATCTGCT
GCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGGAAAGACAC
CACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACCTGAGCGAG
GACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCCGGAATTCA
GTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTTCGCCGAAC
TGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGTGGCTGTGC
TTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTCACCGATCA
GAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCACATCTACT
TTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCAAGAACCTG
AAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGGCGCGTGGG
CCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCATGGCCTTCT
TCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATGCGAAGTAC
TCCGGACACCTGTACGGCCTGGTACCTCCTTCATCGTCAATGGCACCAAC
TTCCACGACAGCAACGGTGAGACGAACAGCGCTTCAGCAAGCTTTCTAGA
CCAT
FMO05446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pop2-RB | 1893 | CG5684-RB | 539..1417 | 9..886 | 4370 | 99.9 | Plus |
| Pop2-RA | 1688 | CG5684-RA | 334..1212 | 9..886 | 4370 | 99.9 | Plus |
| Pop2-RC | 1827 | CG5684-RC | 473..1351 | 9..886 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12000273..12000692 | 764..345 | 2100 | 100 | Minus |
| 3L | 28110227 | 3L | 12000750..12001087 | 346..9 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 11998874..11998998 | 886..763 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:34 has no hits.
FMO05446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:08 Download gff for
FMO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RC | 473..1351 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:23 Download gff for
FMO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 323..1210 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:23 Download gff for
FMO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RC | 473..1351 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:23 Download gff for
FMO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11998874..11998996 | 765..886 | 99 | <- | Minus |
| 3L | 12000273..12000690 | 347..764 | 100 | <- | Minus |
| 3L | 12000750..12001093 | 1..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:08 Download gff for
FMO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11991974..11992096 | 765..886 | 99 | <- | Minus |
| arm_3L | 11993373..11993790 | 347..764 | 100 | <- | Minus |
| arm_3L | 11993850..11994193 | 1..346 | 99 | | Minus |
