FMO05447.5prime Sequence
908 bp (908 high quality bases) assembled on 2008-08-25
> FMO05447.5prime
CAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTCGACACAGC
AGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCCCGAGCTAC
AAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGACTGGTTAA
TTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAAAACAGCTT
GCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGGTTTGCAAA
CTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAAGAAATCCT
GGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTAATGTGGAA
CAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAGATGCACTC
ATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTTTTCCAGCC
ACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCATCCCCATAC
AAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGGATATCAGC
ACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGAAAAGTATA
TGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTACGCAACTC
AACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGGAACAATTA
TCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAATAGCAGTT
GTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTCGTGGTGGA
CGCTGGATGCTTCATCATAAGGACGAACTGGAAGCAGCAGAGGCCTTAGC
CCACCTCGCCTTCAACTGCAGGCAGCGCTGGCACCATATCGCAAGCTTTC
TAGACCAT
FMO05447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11617-RB | 1290 | CG11617-RB | 104..986 | 8..890 | 4400 | 99.9 | Plus |
| CG11617-RA | 1259 | CG11617-RA | 73..955 | 8..890 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 205271..205946 | 725..50 | 3380 | 100 | Minus |
| 2L | 23513712 | 2L | 205047..205214 | 890..723 | 825 | 99.4 | Minus |
| 2L | 23513712 | 2L | 206001..206045 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:17 has no hits.
FMO05447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:48 Download gff for
FMO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11617-RA | 73..960 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:25 Download gff for
FMO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11617-RA | 73..960 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:25 Download gff for
FMO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11617-RA | 73..960 | 8..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:25 Download gff for
FMO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 205042..205212 | 725..895 | 98 | <- | Minus |
| 2L | 205272..205943 | 53..724 | 100 | <- | Minus |
| 2L | 206001..206053 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:48 Download gff for
FMO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 205042..205212 | 725..895 | 98 | <- | Minus |
| arm_2L | 205272..205943 | 53..724 | 100 | <- | Minus |
| arm_2L | 206001..206053 | 1..52 | 92 | | Minus |
