FMO05448.5prime Sequence
972 bp (972 high quality bases) assembled on 2008-08-25
> FMO05448.5prime
CAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGACCTCGTAC
TTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCACTACCCGGG
CAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTACAGCCAGA
ACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCACCCTACGAC
CGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAGCAGCACCA
GGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGGGGTCATGC
CCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGCAACAGCAG
CAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCGCAGCAGGC
CCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACAGGTGACAC
ATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCTGCAAGTTG
CAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGATCGCCTCC
GCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGATGACGCTGC
CCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGGACGTTGGA
GTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATGGGCATGTA
CCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCATGGCATGA
TGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATCCTGGCCAA
CACACGCCTCCTTCCCAAAACCGAACTCGCAGTCCTCGGGGATGCCGTCT
CCACTGTATCCCTGGATGCGAAGTCAGTTTGGTAAGTGTCAAGGAAAGCA
GCTTTCTGACCATTCGTTTGGCGCGCGGGCCAGGTAAGTGTCATATCATA
ATCATATCATAATCATAATCAC
FMO05448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1731..2621 | 9..898 | 4415 | 99.8 | Plus |
| Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 9..893 | 4390 | 99.8 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2405 | 9..893 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 629..9 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908508..6908740 | 898..667 | 1100 | 99.1 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 670..626 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 335..474 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 336..472 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 336..471 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 336..495 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 336..475 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 212..474 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 369..474 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 358..496 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 375..474 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 333..498 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 336..474 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 373..471 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 380..474 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 373..474 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 18..474 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 401..474 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 356..495 | 161 | 59 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 334..497 | 154 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 232..496 | 145 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 405..474 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 369..474 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 349..474 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 349..509 | 115 | 56.2 | Plus |
FMO05448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:25 Download gff for
FMO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1723..2621 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:26 Download gff for
FMO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1723..2621 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:24 Download gff for
FMO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1723..2621 | 1..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:24 Download gff for
FMO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908508..6908738 | 669..898 | 99 | <- | Minus |
| 3R | 6908873..6908911 | 630..668 | 100 | <- | Minus |
| 3R | 6909290..6909914 | 1..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:25 Download gff for
FMO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734230..2734460 | 669..898 | 99 | <- | Minus |
| arm_3R | 2734595..2734633 | 630..668 | 100 | <- | Minus |
| arm_3R | 2735012..2735636 | 1..629 | 99 | | Minus |
