FMO05450.5prime Sequence
945 bp (945 high quality bases) assembled on 2008-08-25
> FMO05450.5prime
CAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATGCCGCTGCT
ACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCCCAGCCCCA
AACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCAGGCCACGC
ATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAACAACAGCAA
CAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGCGGACCACC
CTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCAGATGCACT
TAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAGCGGCTATG
GCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAACAACAGCA
ACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCATAGTCCGA
CAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCGAGCATCCC
GGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGCGAGCCGGA
GAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACAGCTAAGCA
CACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCTACAAATGC
AACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATCT
GAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTGTCCCAAGC
ATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCCACACGGGT
GAAAAGCCTTTTGAGTGTGTCATCTGCAAGAAGCAGTTCCGACAGTCCAG
CACGCTCACAACCACATAAAATACACGTCATGGACAAAGTCTACGTTCCT
GTTAGATCAAACAGAGGAGGATGAGGGGCAAGCTTTCTAGACCAT
FMO05450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aef1-RD | 2684 | CG5683-RD | 475..1399 | 8..928 | 4525 | 99.6 | Plus |
| Aef1-RB | 2579 | CG5683-RB | 370..1294 | 8..928 | 4525 | 99.6 | Plus |
| Aef1-RC | 2622 | CG5683-RC | 413..1337 | 8..928 | 4525 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21435219..21436013 | 8..802 | 3975 | 100 | Plus |
| 3L | 28110227 | 3L | 21436072..21436206 | 798..928 | 475 | 97 | Plus |
| 3L | 28110227 | 3L | 21435814..21435937 | 687..810 | 215 | 78.2 | Plus |
| 3L | 28110227 | 3L | 21435898..21436014 | 603..719 | 195 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:03 has no hits.
FMO05450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:04 Download gff for
FMO05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 408..1342 | 1..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:44 Download gff for
FMO05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RB | 354..1288 | 1..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:53 Download gff for
FMO05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 408..1342 | 1..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:53 Download gff for
FMO05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21435214..21436009 | 1..798 | 99 | -> | Plus |
| 3L | 21436073..21436211 | 799..934 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:04 Download gff for
FMO05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21428314..21429109 | 1..798 | 99 | -> | Plus |
| arm_3L | 21429173..21429311 | 799..934 | 95 | | Plus |
