FMO05451.5prime Sequence
1111 bp (950 high quality bases) assembled on 2008-08-25
> FMO05451.5prime
CAGTCGACATGAGCGTGGAGGAGGAAGTGTTTCGAATCCAAAAGAAGATG
AGCAAGATGGCCAGCGACGGCACAGGACAGGATCAGGCTCTGGACCTGCT
GAAGGCCCTGCAAACGCTTAACATCAATCTCGACATTCTGACCAAAACGC
GCATCGGCATGACCGTAAACGAGCTGCGCAAGAGTAGCAAGGACGACGAG
GTGATCGCTCTGGCCAAGACGCTGATCAAGAACTGGAAACGATTCCTCGC
CAGCCCGGCGCCAACCACACCGAACAACAGCTCCGCTAAGGAGGGCTCCT
CCAACAACAGCAGTGCCTCGAAGTCCACCAGTGCCGCCAAGTCGTCGTCG
TCAATCTCCGGCAAGGATAAGTCCAGTTCATCCAGCTCATCCAAGGATAA
AGAGAAGAAAGGCTCGACATCCTCGTCACAGACCTCGTTTCCCTCCGGCG
GCATGACAGATGCGGTCCGCATCAAATGCCGCGAAATGCTGGCCACCGCA
CTGAAGATTGGTGAAGTGCCCGAAGGATGCGGTGAGCCGGAGGAAATGGC
CGCCGAACTGGAGGATGCCATTTACTCCGAGTTCAATAACACGGATATGA
AGTACAAGAATCGCATTAGGTCACGCGTGGCCAATCTGAAGGACCCCAAA
AATCCTGGATTGCGAGGCAACTTTATGTGCGGCGCCGTCACTGCCAAGCA
GCTGGCCAAAATGACGCCGGAGGAGATGGCCAGCGATGAGATGAAGAAGC
TGCGCGAGAAGTTCGTCAAGGAGGCCATCAACGATGCCCAGCTGGCCACC
GTGCAGGGCACCAAGACCGATCTCCTCAAGTGCGCCAAGTGCAGAAGCGC
ACTGCACCTACACCAGCTGCAGACTCGTTCCGCCGATGAACTATGACCAC
CTTCGTCATGGTGCAACGAGTGCGGCAACCGATGAGTCTTGCGCAGCTTT
CTAGGACATTCGTTTGGCCGCGCGGACCAGGTAGTGGTCATATCATATCA
TATCATATCATATCACACTAGGCTAGAGATCTGTCATGACTATGCTGATT
CCACATTAAACGCGCGCACGACGTCGGACCAATCGAATGATCTGAGTCTT
ACTGGATCTAT
FMO05451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIS-RB | 1773 | CG3710-RB | 260..1188 | 9..934 | 4525 | 99.5 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 260..1188 | 9..934 | 4525 | 99.5 | Plus |
| CG8117-RA | 770 | CG8117-RA | 323..439 | 706..822 | 270 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15059504..15060366 | 934..75 | 4070 | 99.4 | Minus |
| 2L | 23513712 | 2L | 15060432..15060498 | 75..9 | 335 | 100 | Minus |
| X | 23542271 | X | 15644544..15644660 | 706..822 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:40 has no hits.
FMO05451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:09 Download gff for
FMO05451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1198 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:46 Download gff for
FMO05451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 256..1194 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:51 Download gff for
FMO05451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1198 | 9..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:51 Download gff for
FMO05451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15059504..15060366 | 75..934 | 99 | <- | Minus |
| 2L | 15060433..15060498 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:09 Download gff for
FMO05451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15059504..15060366 | 75..934 | 99 | <- | Minus |
| arm_2L | 15060433..15060498 | 9..74 | 100 | | Minus |
