FMO05452.5prime Sequence
1211 bp (1033 high quality bases) assembled on 2008-08-25
> FMO05452.5prime
CCTATACGAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACC
GAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCA
GCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACG
GGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGC
GGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGC
CGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCG
CCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGAC
ATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCT
GGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCA
AGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGC
AGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGT
CTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTG
TGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGAC
TACGAGGAGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAA
GCGACACGTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGG
CGCAGAATACAGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAAT
GTGAATGGCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAT
AACAACAACATGGCCCACAGACACCGACCGGCGGTGGCTCACCGTTTGCC
GCTGCTGCTGCTGCCGCCGCCGCCGCTGCCCATATGAGATCACTGGGCGC
GTCAGCGCAAGCTTCTAGACCATCGTTGCGCGCGGCCAGGTAGTGTCATA
TCATATCATAATCATATCATATCACACTAGCTAGAGATCTGTCATGACTA
GTGCCTGATTCCCACAATAAACGCCCGCGCACGAACGTCTGAACATTCGA
TGGATCTGAGGTCTACTGGATCATCACGATCAGGCGCACGAATCCAATGC
GCTGCACATCGAACTGTGTATCTAAGACTCGCACCATGGAACATCTCACA
CGCGTAGTGTA
FMO05452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RD | 2494 | CG44425-RD | 763..1697 | 24..953 | 4505 | 99.1 | Plus |
| Bx-RC | 3413 | CG44425-RC | 599..1533 | 24..953 | 4505 | 99.1 | Plus |
| Bx-RB | 2051 | CG44425-RB | 320..1254 | 24..953 | 4505 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 24..466 | 2215 | 100 | Plus |
| X | 23542271 | X | 18570561..18570910 | 590..937 | 1605 | 98.6 | Plus |
| X | 23542271 | X | 18567509..18567636 | 465..592 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 222..293 | 125 | 67.1 | Plus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 207..286 | 122 | 65 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 253..289 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 191..284 | 112 | 59.6 | Plus |
FMO05452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:01 Download gff for
FMO05452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 320..1258 | 24..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:47 Download gff for
FMO05452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RC | 592..1535 | 16..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:53 Download gff for
FMO05452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 320..1258 | 24..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:53 Download gff for
FMO05452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566696..18567138 | 24..466 | 100 | -> | Plus |
| X | 18567511..18567636 | 467..592 | 100 | -> | Plus |
| X | 18570564..18570933 | 593..956 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:01 Download gff for
FMO05452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460729..18461171 | 24..466 | 100 | -> | Plus |
| arm_X | 18461544..18461669 | 467..592 | 100 | -> | Plus |
| arm_X | 18464597..18464966 | 593..956 | 97 | == | Plus |
