FMO05453.5prime Sequence
979 bp (979 high quality bases) assembled on 2008-08-25
> FMO05453.5prime
CAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGTGTCGCATC
TGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAGCCCGATTT
TCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGAGAGTCCCG
ACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCAGAGCTGCC
CTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTGAAGGAGCA
GAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCAGGAGACGA
AGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTACCGGTAGC
GACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTAACGCTGGA
GAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAGCATAGAGC
CTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTCCCAAACCG
GTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTTACCTGCAA
CATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAACCACATGA
AAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTCACAAACGT
TTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCACACCGGTAA
TCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGATCCCTCCA
CTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGTACAAATGC
GAGTTCTGCAGCAGGTCCTTTGGCTACTCCAACGTCCTCCGGGTTCATCT
GAAAACCCATACCGGTGAACGACCATTTAGCTGCCAGTACTGCCAGAAGT
CCTTCTCCCAGCTGCACCACAAAAACAGCCACGAAAAGTCACACAAGGAC
GAAAGAGGTAAAGCAAGCTTTCTAGACCA
FMO05453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4854-RA | 1220 | CG4854-RA | 98..1050 | 9..959 | 4725 | 99.8 | Plus |
| CG4936-RA | 1824 | CG4936-RA | 1311..1457 | 656..802 | 225 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20028339..20028838 | 135..634 | 2500 | 100 | Plus |
| 3R | 32079331 | 3R | 20029198..20029391 | 768..959 | 905 | 99 | Plus |
| 3R | 32079331 | 3R | 20028904..20029039 | 635..770 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 20028155..20028280 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:48 has no hits.
FMO05453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:11 Download gff for
FMO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 93..1055 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:49 Download gff for
FMO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 93..1055 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:56 Download gff for
FMO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 91..1053 | 1..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:56 Download gff for
FMO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20029200..20029394 | 770..962 | 98 | | Plus |
| 3R | 20028904..20029038 | 635..769 | 100 | -> | Plus |
| 3R | 20028148..20028280 | 1..134 | 97 | -> | Plus |
| 3R | 20028339..20028838 | 135..634 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:11 Download gff for
FMO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15853870..15854002 | 1..134 | 97 | -> | Plus |
| arm_3R | 15854061..15854560 | 135..634 | 100 | -> | Plus |
| arm_3R | 15854626..15854760 | 635..769 | 100 | -> | Plus |
| arm_3R | 15854922..15855116 | 770..962 | 98 | | Plus |
