FMO05455.5prime Sequence
987 bp (987 high quality bases) assembled on 2008-08-25
> FMO05455.5prime
CAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACTTCTCCATC
GATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAACCCATCAA
AACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTACTCCAATT
CCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCAGCAGGACC
AGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAAAACAATGA
CAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCTGGACGAGG
ACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAATGACCGCC
GGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTCATCATGAT
GGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGGCATCTATC
AGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGCGGGGCTGG
CAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTCACGAAGAT
TCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGATCCTGGACC
CCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGCTGAGGCGC
AAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGTCAGGCCAT
ATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGCTTCCAGCT
ACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCGCCCTGTAC
CAGCGCATGAATCCCGCTGCCTATCAGCTGCCTATCAGCAGATGCAGTAC
CAGCACGCTCCTCAGCCCACCATCATCAGCGCCCCATCCCGCCCAGATGC
AGGCTATCCACAACAATTGAACGCCGAGTTGTTCAGCGCATGCAGTTCTT
TGGCAAGTTTCCATCCAGCGCAAGCTTTCTAGACCAT
FMO05455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slp1-RA | 1425 | CG16738-RA | 110..1075 | 9..969 | 4690 | 99.4 | Plus |
| slp2-RA | 2346 | CG2939-RA | 905..1217 | 375..687 | 385 | 76.8 | Plus |
| croc-RA | 2347 | CG5069-RA | 563..725 | 436..598 | 245 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3825784..3826749 | 9..969 | 4565 | 99.4 | Plus |
| 2L | 23513712 | 2L | 3837744..3838016 | 375..647 | 375 | 75.8 | Plus |
| 3L | 28110227 | 3L | 21475755..21475917 | 598..436 | 245 | 76.7 | Minus |
| 3L | 28110227 | 3L | 4020394..4020483 | 464..553 | 240 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:56:28 has no hits.
FMO05455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:03 Download gff for
FMO05455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 103..1083 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:52 Download gff for
FMO05455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 98..1078 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:12 Download gff for
FMO05455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 103..1083 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:12 Download gff for
FMO05455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3825777..3826757 | 1..977 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:03 Download gff for
FMO05455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3825777..3826757 | 1..977 | 98 | | Plus |
