FMO05456.5prime Sequence
993 bp (958 high quality bases) assembled on 2008-08-25
> FMO05456.5prime
CAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCGTGGACAGC
GCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCGGATCAGAC
AGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGCACTTAATC
TTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAGATTGCCTG
CAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAGCAGCTACT
GCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAAGATGGACG
CAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCGAGATACTG
GAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGACCCCGATCG
TCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTGTACGAAAC
CCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCGAGTTTTTA
CCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCTCAGCTGGA
GCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTATGCTGCCG
TCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCAATCGCCTG
CTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGCCAGTACTG
CCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGTGCGCAATT
CGCACGTCTGCAGTACTGCACCACCGCCTTCGCCAAGGTTCGCGATCTCA
ATGAGCATAATTCGGCAGAAGCATCCGCATCACAGTGCGTTGTCTGCTCC
ACAACTTTAGTACCAGTAGCAATCTGAGGGCTCACTAAAGAAATTCATGG
AGTTCAGCTGCCCGCACAGGTGGCACTGCTGGATTACAGGCCACCCAGTT
CAGGATCGGAATATCCGCCGCTCAGCAAGCTTTTCTAGACCAT
FMO05456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13123-RA | 1094 | CG13123-RA | 101..1070 | 8..974 | 4610 | 98.9 | Plus |
| CG13123-RC | 1087 | CG13123-RC | 101..1063 | 8..974 | 4495 | 98.2 | Plus |
| CG13123-RB | 996 | CG13123-RB | 45..972 | 50..974 | 4400 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9791996..9792828 | 963..134 | 3800 | 98.7 | Minus |
| 2L | 23513712 | 2L | 9792881..9793007 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:25 has no hits.
FMO05456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:15 Download gff for
FMO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..1073 | 8..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:53 Download gff for
FMO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 91..1063 | 8..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:53 Download gff for
FMO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..1073 | 8..978 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:53 Download gff for
FMO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9791982..9792827 | 135..978 | 98 | <- | Minus |
| 2L | 9792881..9793007 | 8..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:15 Download gff for
FMO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9791982..9792827 | 135..978 | 98 | <- | Minus |
| arm_2L | 9792881..9793007 | 8..134 | 100 | | Minus |
