FMO05458.5prime Sequence
1250 bp (1060 high quality bases) assembled on 2008-08-25
> FMO05458.5prime
CAGTCGACATGTCGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGC
TTCGAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACAC
CCAGTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATAT
TCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTC
TTCGCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCAT
CAAGGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGT
GCGCCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCC
TTGTGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTA
TGTATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCC
GGGGCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACA
GAGTTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGC
TAACGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCA
TTCCCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACG
GCGCTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGA
GAAACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACT
GCGAGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAAC
CAGTTATTGGAGGCGATGTTTCACTGCCTTGAACAAGGCCTGGTGTGTGC
ACCACTTTGCGTGCTCCGTGTGCGACACGAAGATGACACAAAATCGAAAT
TCTACGAGTACGACGAGAAGCCCGTGTGCAAAAGTGCTATGACCGATTTC
CAAACGAACTCAGACGACGTCTGCGCACCGCCCACGAGATGACAATGAAA
AGAACACCGCAGCTTTCTAGACCATTCGTTTGGGCGCGCGGCCCAGGTAA
GTGGTCATATCATAATCATAATCATATCAAATCCCACTAGCCTAAGGAGA
TCCTGGTCATGGACTAGTGCCTGATTCTCCCAATAAAACGCCCGGGCGGC
AACCGACGTTCTGAAACATTCGAATTGGAATTCTAGAGTCATATCTGGAA
TTCATACACAGAGAATTTCAAGCGAGAGACTCTGCATTACCTCATTAATG
FMO05458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RD | 1500 | CG7954-RD | 253..1259 | 7..1008 | 4895 | 99.4 | Plus |
| stck-RC | 1335 | CG7954-RC | 92..1098 | 7..1008 | 4895 | 99.4 | Plus |
| stck-RB | 1388 | CG7954-RB | 141..1147 | 7..1008 | 4895 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 113..418 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 560..818 | 1250 | 99.6 | Plus |
| 3R | 32079331 | 3R | 8359531..8359715 | 819..1001 | 810 | 98.4 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 419..560 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358485..8358590 | 7..112 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:16 has no hits.
FMO05458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:07 Download gff for
FMO05458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 135..1156 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:40 Download gff for
FMO05458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 78..1099 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:59 Download gff for
FMO05458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 135..1156 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:59 Download gff for
FMO05458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8358479..8358590 | 1..112 | 98 | -> | Plus |
| 3R | 8358649..8358954 | 113..418 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 419..560 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 561..818 | 99 | -> | Plus |
| 3R | 8359530..8359732 | 819..1016 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:07 Download gff for
FMO05458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184201..4184312 | 1..112 | 98 | -> | Plus |
| arm_3R | 4184371..4184676 | 113..418 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 419..560 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 561..818 | 99 | -> | Plus |
| arm_3R | 4185252..4185454 | 819..1016 | 95 | == | Plus |
