FMO05460.5prime Sequence
1216 bp (950 high quality bases) assembled on 2008-08-25
> FMO05460.5prime
CAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACACCCTGCGGA
TTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATCACCGCGGT
AATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCATCCGCAACT
CGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACCACCTCTTC
CTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACCTCCGTAGG
CCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTCGCGACTTT
TCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACAACTTTGCG
CGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTGCGGTTCTG
CGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTGTAGTGTGT
GCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGGTAAACAAC
TGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTGGGCTATGC
TCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGACTTTGTCG
AGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAATGGGTCGT
TTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCCATTAGTTT
GGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAATCGCACGA
CATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCCCCGATAAG
AATGGTTATAACTTGGGGCGTATGCCAATTTCTGCGAAAGTATTTGGTGA
CGACTGGCAATACTGGTTCCTGCCCGTGTTTTCGAGCTTTGGCGATGGCA
AAACCTTTTCCGATTCGACATATGGAAGAGGACACGGTATCTTTGCTAGG
ATATCACACGATACCCGCATCGAGTGGAGGAGGACTTTCTGCAGAGCCGC
GATTTCAGACTCGATTCCAGCAGCTTTCAGAACCATTCGTTTGGGCGGCG
GGGCCGGTATGGGTCTAATCTATAATCATAATCATAATCTAATCCCAACT
AGGCCTAGGGATCTGGGACTGACCTAGTGCCTTGGGTTCTACAATAAAAC
GGCTGGTCGCACGACGTCTGGACATCGATGGGATTCTAGAGGTCATTCAC
GTGATCTATCACAACA
FMO05460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1407-RD | 1857 | CG1407-RD | 365..1378 | 9..1019 | 4860 | 99 | Plus |
| CG1407-RB | 1857 | CG1407-RB | 365..1378 | 9..1019 | 4860 | 99 | Plus |
| CG1407-RA | 2238 | CG1407-RA | 365..1242 | 9..886 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10031579..10031827 | 621..373 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 10032393..10032529 | 145..9 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 10031284..10031419 | 756..621 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 10032214..10032335 | 266..145 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 10031085..10031215 | 886..756 | 560 | 98.5 | Minus |
| 2R | 25286936 | 2R | 10032019..10032125 | 373..267 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 10028922..10029059 | 1019..885 | 400 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:11 has no hits.
FMO05460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:50 Download gff for
FMO05460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 358..1388 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:43 Download gff for
FMO05460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 353..1383 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:04 Download gff for
FMO05460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1407-RB | 358..1388 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:04 Download gff for
FMO05460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10032214..10032335 | 145..266 | 100 | <- | Minus |
| 2R | 10032394..10032534 | 1..144 | 97 | | Minus |
| 2R | 10028935..10029057 | 887..1007 | 94 | <- | Minus |
| 2R | 10031085..10031214 | 757..886 | 98 | <- | Minus |
| 2R | 10031284..10031419 | 621..756 | 100 | <- | Minus |
| 2R | 10031580..10031826 | 374..620 | 100 | <- | Minus |
| 2R | 10032019..10032125 | 267..373 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:50 Download gff for
FMO05460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5916440..5916562 | 887..1007 | 94 | <- | Minus |
| arm_2R | 5918590..5918719 | 757..886 | 98 | <- | Minus |
| arm_2R | 5918789..5918924 | 621..756 | 100 | <- | Minus |
| arm_2R | 5919085..5919331 | 374..620 | 100 | <- | Minus |
| arm_2R | 5919524..5919630 | 267..373 | 100 | <- | Minus |
| arm_2R | 5919719..5919840 | 145..266 | 100 | <- | Minus |
| arm_2R | 5919899..5920039 | 1..144 | 97 | | Minus |
