FMO05464.5prime Sequence
1173 bp (999 high quality bases) assembled on 2008-08-25
> FMO05464.5prime
CAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTCCCAAGACG
GAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGACCCGAGTT
CGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCATCTATGATG
TCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACATATGGGAT
CGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAAACCAAATG
GAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGATTGAGACGG
GCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGGATCTATCC
TTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCCCAGAGCTA
CGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAATAGCTTTT
TGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGGGCTACGAC
ATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGACGACAACGA
GATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCAGCAATTAT
CCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACAGCCACGAA
CATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACGCCGATGGT
TGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACAGCAGCAGA
CACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACGGAGAAGTG
ACCATTGAGCCCATTTACAAGCCTGCGGCTATCAGACGCGCATTACCCAG
CGATTTTCTGACCAATCCCTTCAAGCGCAAGGCAACCCAGCGCGCTTCAG
ACCCAAGTGACGTCGTCCTTCACGATCCATCGAGCTCTACTGCTATCGCT
GTGAACACTGCGCAGCATGCGAGATCGACGGAGCGGTCAGTCGAGTCGCA
CATCTGAGACGCAGTACAGACGAAGCGCAGCTTCTAGACATCGTGCCGCG
TCAGTATGGCTATCTACCTATCTATCTATCAACTAGCTAGATCTGGCTGA
CATGCTGGATTCCACATAAGCGGACACAGGGCCTGACATCATGATCAGAG
TCTACTGACTATCACAGGATCAG
FMO05464.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip3-RA | 1471 | CG12767-RA | 180..1161 | 5..977 | 4670 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18129179..18129897 | 229..943 | 3395 | 99.4 | Plus |
| 2R | 25286936 | 2R | 18128975..18129101 | 102..228 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 18128673..18128770 | 5..102 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 19:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 723..779 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 723..779 | 116 | 69 | Plus |
FMO05464.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:03 Download gff for
FMO05464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 175..1177 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:14 Download gff for
FMO05464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 169..1171 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:03 Download gff for
FMO05464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 175..1177 | 1..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:03 Download gff for
FMO05464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18128668..18128770 | 1..102 | 96 | -> | Plus |
| 2R | 18128976..18129101 | 103..228 | 100 | -> | Plus |
| 2R | 18129179..18129936 | 229..977 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:03 Download gff for
FMO05464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14016173..14016275 | 1..102 | 96 | -> | Plus |
| arm_2R | 14016481..14016606 | 103..228 | 100 | -> | Plus |
| arm_2R | 14016684..14017441 | 229..977 | 98 | -> | Plus |
