FMO05465.5prime Sequence
1220 bp (1029 high quality bases) assembled on 2008-08-25
> FMO05465.5prime
CAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTCCGAGCATC
GGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTGGCCAATCC
TGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGATGCCGGCAC
CCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGTCGGACGCC
AGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCGCTGGCGCA
CAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCAGCAGCAGC
AGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGAGCACTCCG
CAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCCCACATGAT
GCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGGTGGCGGAG
ATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGCCGATGACA
CCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAACTTCAGAA
CATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAAGAAAATAG
CATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTGCGGCTGTG
ATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTCAGCTCCGG
CAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAGACTGGCAG
CGAGAAAGTATGCGCGCATCATCCAAAGCTCGGTTTCCCTGCAAAGTTCC
TCGACGATAAGATTCAAAACATGGTCGGCTCCTGCGATGTCAAGTTCCCC
CATACGCTTGGAAAGCCTGGTGCTGACCCATTGCAACTTCAGCAGCTACG
AGCCTGAGCTATTTCCCGGCTTAATCTATCGTATGGTGCGACCTCGAATT
CGTGCTCCTCATCTTCGTGTCCGGAAATGTGTTGCTCACTGAGCAAAGTG
CGCAGGAGATCTACGATGCCTTCGACAGAATTCCCATTTAAGAGTTCAAG
GAGCAGTCAGCAAGCTTCTTGAACATTCGTTTGCCGCGGTCCAGGTAGTG
TCATATCATAATCATAATCTAAGCAATCCCACTAGCTAGGAATTCTGCAT
GACTATGCTGATTCCCCATAAAGCCCGGCGCTACCAGGCTCTGAACATTC
CAGATGGATTTCTTGAGAGT
FMO05465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 191..1249 | 9..1059 | 4925 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687452 | 791..9 | 3870 | 99.9 | Minus |
2R | 25286936 | 2R | 21686368..21686605 | 1027..791 | 875 | 95.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 167..316 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 168..321 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 167..317 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 167..317 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 286..328 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 167..196 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 167..190 | 111 | 95.8 | Plus |
FMO05465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:13 Download gff for
FMO05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 184..1231 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:02 Download gff for
FMO05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 182..1229 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:10 Download gff for
FMO05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 184..1231 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:10 Download gff for
FMO05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686368..21686605 | 791..1027 | 95 | <- | Minus |
2R | 21686670..21687459 | 1..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:13 Download gff for
FMO05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17573873..17574110 | 791..1027 | 95 | <- | Minus |
arm_2R | 17574175..17574964 | 1..790 | 99 | | Minus |