FMO05466.5prime Sequence
1199 bp (1036 high quality bases) assembled on 2008-08-25
> FMO05466.5prime
CAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAG
AAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAAC
CTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACC
AGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAG
TACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCG
CCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGG
AGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTC
AAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGA
GGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGT
TCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTC
TTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTC
CAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGA
GCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAG
GTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATG
CCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACA
TGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAA
CGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGC
CGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAGTTCAAGACCA
AGCGCACCTACAGCACCACTTGCGCACCCACCAGACGACCGGCCGCGCTA
CCCCTGCCCGACTGCGAGAATCGTCGTGACAGTACACCCTGAGGTGCACA
GCGGGTCACAGCGGTCGAGAGCCAGGAGTCGGCGAGCAGAGCACGTCACG
TTCTTTGCAGCTTTCTAGACATCGTTTGGCGCCGTCAAGTAAGTGGTCAT
AATCTTAATCATATCTAATCTATCACACTAGCTAGAATCTGCTATGATTG
GCTTGATCCCACAATAAAGGCCGGGCACGAGAGCGTCTGTAACAACTCC
FMO05466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 95..1132 | 9..1034 | 4845 | 98.7 | Plus |
| Sry-beta-RA | 1260 | CG7938-RA | 95..1132 | 9..1034 | 4845 | 98.7 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 219..1185 | 80..1034 | 4490 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30039937..30040830 | 80..970 | 4320 | 99.7 | Plus |
| 3R | 32079331 | 3R | 30039813..30039886 | 9..82 | 370 | 100 | Plus |
| 3R | 32079331 | 3R | 30044196..30044333 | 660..797 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 479..514 | 117 | 80.6 | Plus |
FMO05466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:44 Download gff for
FMO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 88..1165 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:03 Download gff for
FMO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 75..1152 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:52 Download gff for
FMO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-beta-RA | 88..1165 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:52 Download gff for
FMO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30039806..30039885 | 1..81 | 95 | -> | Plus |
| 3R | 30039939..30040936 | 82..1060 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:44 Download gff for
FMO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25865528..25865607 | 1..81 | 95 | -> | Plus |
| arm_3R | 25865661..25866658 | 82..1060 | 97 | | Plus |
