FMO05468.5prime Sequence
1204 bp (1034 high quality bases) assembled on 2008-08-25
> FMO05468.5prime
CAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGGCCTTCCAG
CTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTGGGCAACTA
CATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGGAATGACCC
GCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGTCCGGCCTC
AGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCCGTAGAGGT
GGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGTCTCCGTGA
ACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGAAGCAGCCA
CAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCAGTGCCACA
GGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGTTCGCACAT
TCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGGAGAATGCG
GCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAGCTAGAGGG
TCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAGCATGATTA
CTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACCTCAATCCC
CTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAGATCGAAGC
CTTTCCCAACGATCCCCCCATCCTCGAGGAGACCTGCGACCAGCGGGTCA
TTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCGACCAGGTC
GAGTGGGACATGTCCGAGAAGAACAACAACCCCGAGGAGTTTGCCATTAA
ACTCTGTGCGGAATTGGGATTGGGAGGAGAGTTTGTTACGGCCATTGCCT
ACAGCATTATGGGTCAGCTATCGTGCACTGTCGACGTACGCCTTCAGCGA
GGCCCTCTATCAACGATTGATGTGCCCTTCGGATCCCAGCGACGCTGACG
CATGGGCGCATTCCTAGAGACGCTTACGACGCGGAATGAGAAAAATCCGC
GACAGACCGCAACGGCGCAGAATGGCGACGACTGCATACCACACCTGGTG
GGCCAGCTTCAGAACATTCGTTTGGGGCGCGGCCAGTATGCTATTAATCT
ATCAACTTATCCACTAGCTAGGATCGGGTCATGAACATAGGCCTGTGGAA
TTCA
FMO05468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..1240 | 7..1099 | 5060 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472577 | 281..1027 | 3470 | 98.9 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 7..283 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:11 has no hits.
FMO05468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:19 Download gff for
FMO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 126..1222 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:04 Download gff for
FMO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 135..1231 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:05 Download gff for
FMO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 126..1222 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:05 Download gff for
FMO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471051..5471330 | 1..280 | 98 | -> | Plus |
| 3R | 5471825..5472641 | 281..1084 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:19 Download gff for
FMO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296773..1297052 | 1..280 | 98 | -> | Plus |
| arm_3R | 1297547..1298363 | 281..1084 | 97 | | Plus |
