FMO05470.5prime Sequence
1221 bp (1045 high quality bases) assembled on 2008-08-25
> FMO05470.5prime
CAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGTTCATTTTC
TGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTAATGCTGCA
CCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACCCGGGAACG
AGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGCAGACGGCG
ATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTGCAGGAAAG
TCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGTTGGTGTGG
AGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGGTTATAGAC
CTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCGTACGAAAT
ATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCAGGAGAAGA
AGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCTCCGTTAAG
TTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGACTCACCGA
GGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGATTGCATAT
GCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCAAGTTGCAC
CTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAGTGCTCCCA
GCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACTGCATGCGG
GGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACAGCAACGC
CAGCGGACGCATCCAGCACGAACGCATGCGCCACACGAATGTCAAGCCCT
TCACGTGCAAGGAATGCAATAAAAGCTTTGCCATGAGCGGAAAACTCCGC
ACGCACATGCTGAGTCACCACCGGAGTGCGAGCGTTCCACTGCGACTCCT
GCCCAGTCTCCTTCGTTCGCCGCTCCCACCTGACCTCCCACTATTCGCTC
AAAAGGTCACGCCCACACTTCAGCGCCCAGGCGGCACTGGAACAATCCTG
GTGACTGACGTGAAGCAGTACGGCCATGCGACGGGCTAGATGAGCTTTAC
TAGAAAGGTGATCTGCAGCTTTCTGACATTCGTTTGGCCGCGGCAGTATG
TCTATCCTAATCGTAGCTAGATCGATTCACCACTTAGGCACTTAGAGGAT
TCTCGTGCCTACGGGCTGACC
FMO05470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1792-RA | 1344 | CG1792-RA | 100..1201 | 9..1103 | 5095 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31616575..31617273 | 129..828 | 3450 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31616402..31616521 | 9..128 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 31617349..31617459 | 828..939 | 510 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31617522..31617623 | 940..1041 | 400 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:14 has no hits.
FMO05470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:45 Download gff for
FMO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..1155 | 9..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:56 Download gff for
FMO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 63..1118 | 9..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:28 Download gff for
FMO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..1155 | 9..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:28 Download gff for
FMO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31617522..31617623 | 940..1041 | 97 | == | Plus |
| 3R | 31616402..31616521 | 9..128 | 100 | -> | Plus |
| 3R | 31616575..31617272 | 129..827 | 99 | -> | Plus |
| 3R | 31617349..31617459 | 828..939 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:45 Download gff for
FMO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27442124..27442243 | 9..128 | 100 | -> | Plus |
| arm_3R | 27442297..27442994 | 129..827 | 99 | -> | Plus |
| arm_3R | 27443071..27443181 | 828..939 | 99 | -> | Plus |
| arm_3R | 27443244..27443345 | 940..1041 | 97 | == | Plus |
