FMO05472.5prime Sequence
1201 bp (1032 high quality bases) assembled on 2008-08-25
> FMO05472.5prime
CAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCCAGAATATC
TCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAGC
CGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGAACGTGACC
GGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACCAATCCTGG
CAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCACACCTGCT
CTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTACTCGGAGA
CGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCACAAATTTG
GCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAACAACGGTGC
GAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGGCGGTCACA
TGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACGGAGCTAGC
AACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGTGGCGCCGG
CGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAGCGGCGGCA
CAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCACCAAAGGAG
AAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAGGCGCTGGA
TGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTACCCGGATC
GCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGCGGCGCTTC
GTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCACCTGACCAG
GCACAGCTCTCCCACATACCGGACAGGCCGCATGTGTGCATATCTGCATG
AAGTCCTTCAGCGCAAGGAGCAGCTCACTCTGCACATTGTCATCCATTCC
GGCGAGAAGAGCATGTTTGCATTGAGTGTGAAAAGTTTCTATCGCAAGGA
TCACTTGCGCAAGCACACACGATCGCCCATCGCCGGCGTGTCAGTCGAGG
TTCGGCCAACGTTAACGGATTCCGCCGAGGCCGTGCGCGTGAGCCGCAAC
AGTGCCAAAGCCACGGCTGCACGTCCGAGCTTCTAACCTTCTTGACCGGG
CAGACGTCAATCAATCATACTAACTAATCCACCATGCCTAGGAGAATCCT
G
FMO05472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RA | 1522 | CG6930-RA | 151..1285 | 9..1123 | 5050 | 97.5 | Plus |
| l(3)neo38-RL | 2247 | CG6930-RL | 880..2010 | 13..1123 | 5030 | 97.5 | Plus |
| l(3)neo38-RK | 1611 | CG6930-RK | 244..1374 | 13..1123 | 5030 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769372..11770105 | 890..158 | 3605 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11771154..11771300 | 159..13 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 11769060..11769154 | 984..892 | 360 | 96.8 | Minus |
| 3R | 32079331 | 3R | 11768951..11769000 | 1034..985 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:48 has no hits.
FMO05472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:34 Download gff for
FMO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 145..1243 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:30:58 Download gff for
FMO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 145..1243 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:55 Download gff for
FMO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 145..1243 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:55 Download gff for
FMO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11769058..11769154 | 892..984 | 95 | <- | Minus |
| 3R | 11769370..11770103 | 160..891 | 99 | <- | Minus |
| 3R | 11771154..11771303 | 8..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:34 Download gff for
FMO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7594780..7594876 | 892..984 | 95 | <- | Minus |
| arm_3R | 7595092..7595825 | 160..891 | 99 | <- | Minus |
| arm_3R | 7596876..7597025 | 8..159 | 98 | | Minus |
