FMO05474.5prime Sequence
1205 bp (1022 high quality bases) assembled on 2008-08-25
> FMO05474.5prime
CAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCGGCCCACAC
AGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCGTATAACAC
ACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTTGGCGGATC
ACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGCAGATGCAG
CACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCCATCGCCGG
ATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGCTCGTGGCC
AGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACGACAGCAAG
TCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTCGTATGCAA
CTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACTGGCACAGC
ACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGACTCTACTAT
TGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAATGCCCGCTA
CAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCCACATCGCT
GTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGAAGATCCAC
ATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTCGAGGGCTG
CCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACACGCGCACCC
ATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCCAGAAGCGC
TACACGGATCCGTCCTCGCTGCGAAAGCACGTCAGACCTTCAAGCACAGC
ATCCACCTGATCGCCAGCCAGGCGCTCACTCTGCCCAGCGTACCCTGTCT
CCTGAGGGCAGCAGCGAATCAGCGTTCACGTGTCTTCCCGCTGCCAGCAG
TGTGAGTCCACCAGCTCCTCTCATCGCCGCTACTACGATGACTCAACATG
AGCCCAGCGATACTCGCTAACCCAAAGATGCGGAATTCTCGCAGCTATGC
TAGCGATGCGCATAGCTATCTCACAGCGAGACTCTCGTAGATGAGTGGGA
GTCACGTGAACTGCATCATGAATCCAGCCTTCAGACATTCATGGCCCGGC
AGGTATGGCTTATTCCTACTATCTAATCTATATCACATATGGTCGAGGAG
AAAAT
FMO05474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sug-RA | 1343 | CG3850-RA | 71..1167 | 7..1080 | 4930 | 97.7 | Plus |
| sug-RB | 1468 | CG3850-RB | 228..1292 | 39..1080 | 4770 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12929782..12930365 | 417..994 | 2610 | 98.5 | Plus |
| 2R | 25286936 | 2R | 12928930..12929341 | 7..418 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:04 has no hits.
FMO05474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:28 Download gff for
FMO05474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..1173 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:11 Download gff for
FMO05474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 62..1170 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:36 Download gff for
FMO05474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..1173 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:36 Download gff for
FMO05474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12928924..12929341 | 1..418 | 99 | -> | Plus |
| 2R | 12929784..12930474 | 419..1086 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:28 Download gff for
FMO05474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8816429..8816846 | 1..418 | 99 | -> | Plus |
| arm_2R | 8817289..8817979 | 419..1086 | 96 | | Plus |
