FMO05475.5prime Sequence
1186 bp (957 high quality bases) assembled on 2008-08-25
> FMO05475.5prime
CAGTCGACATGAAGTCCAATACGTACGAACTGCACAACTACGCCGATCTG
AATGACATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAAAGGAAGAC
GGCCAGTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCGACAAAAGA
GGGGCTCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACTTTCAACTA
GAATTAGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAAAATGCACC
CACCAAGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCGTCGGAAAA
CAGCGAATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACACGGCCTTT
GAGACACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAGGATGCGGC
CAATACCAACGAGAAGCTGACCAAAATCACCACCCTGAGACTGGCCATGA
AGTACATCACCATGCTGACCGACTCGATTCGAGATCCCAGCTATGAAAGC
GAATTTATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAGGCGAGAGT
GGACTTGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGTTCCAGTTG
CCAAGAAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTTCCGCCGCG
AGCAAAAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAGATACCACC
GATAAGTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGGATCGCCTG
CCTCCTCCGCCTACGCATCGCTCTCCTCGTCATCGAACAGCCACAGCAGC
AGTAGCAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTGAACGGAAT
CAGCGCCCTGGACTCTCTGCTTCTGGATACCTCCGATGGGGATTCCCTCC
CCTGTCTAAGTCCCGGCTATGGAGTCTACTCCCTGGCAGCGGGGATCCCT
GTTGCCCGTTGCCGAGTGATCTGCCCATGTCGTCTGAGAGTCGATGTGAG
CTCAGTCTGCATACTGACAGTCAGATCCTCGACTTGCAGCGATCAGCAGC
GTCGCTGATAGTCGTTTCCGCTCTGATGTTCATCGACCTGCGACCAGGAT
CGGATGTTCCAAGCAGCTTCGACTCTGCCCGGCCAGTAATTCTAACTGAT
CATTCTGTCGTGATGTCCCACAATAGGTCGCTTAGA
FMO05475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 2411 | CG5441-RB | 960..1971 | 9..1010 | 4790 | 98.8 | Plus |
| tx-RA | 1652 | CG5441-RA | 201..1212 | 9..1010 | 4790 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26447540..26448517 | 9..982 | 4660 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:39 has no hits.
FMO05475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:25 Download gff for
FMO05475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 542..1519 | 9..982 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:13 Download gff for
FMO05475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-RA | 411..1388 | 9..982 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:59 Download gff for
FMO05475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 201..1178 | 9..982 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:59 Download gff for
FMO05475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26447533..26448517 | 1..982 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:25 Download gff for
FMO05475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22273255..22274239 | 1..982 | 98 | == | Plus |
