FMO05476.5prime Sequence
1168 bp (953 high quality bases) assembled on 2008-08-25
> FMO05476.5prime
CAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAGAAAGCACT
GATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAA
AACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCT
TGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTG
CTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCC
CAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGG
ATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTC
TACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAA
AATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATG
ATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCT
TTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAA
TCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAATTTCCGAGC
GTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAACCCGCAGT
GGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAAAACTCGTG
TATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAAAGCATGCG
GCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTACGTGCCCC
AAGCGGGATCGCATCCAGACGAACGCCAGCTCAATAGCAAGAAGCGCAGT
CCGTGCCGGAAGCCGCGAAGAAGATGAGCCGTCCAAGTTGCGTCGGTGCA
TTGCTATAAGACGAGACACGGAAAGCAATGATAGCGAGACTGCGACGACT
CGCGAAATGACGTGTCCGACCGATGCGATACGTCTGCTATACTGCCCATA
GATGCTGCTGCAGCATCGAGGCATGATAGAGCGCGCTGAGTCTGCATCAC
AAGATCTAGTGCATGCACATGCTGACCTAGACTCTCAGACTGCAGAGCTT
CGACACTCGTGCCGGCAGAGTCTATCATCTATCATAATTCCCAATAGGCC
ATAGAATCTCTGGATATA
FMO05476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p53-RC | 2095 | CG33336-RC | 630..1579 | 9..951 | 4545 | 99.1 | Plus |
| p53-RA | 1577 | CG33336-RA | 112..1061 | 9..951 | 4545 | 99.1 | Plus |
| p53-RB | 1870 | CG33336-RB | 442..1354 | 46..951 | 4360 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23050815..23051127 | 501..189 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 23050504..23050750 | 748..502 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 23050232..23050442 | 951..748 | 695 | 95.3 | Minus |
| 3R | 32079331 | 3R | 23053118..23053201 | 128..45 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 23053357..23053394 | 46..9 | 190 | 100 | Minus |
| 3R | 32079331 | 3R | 23053012..23053048 | 164..128 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:53 has no hits.
FMO05476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:25 Download gff for
FMO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p53-RA | 112..1063 | 9..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:14 Download gff for
FMO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p53-RA | 96..1047 | 9..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:17 Download gff for
FMO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p53-RA | 112..1063 | 9..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:17 Download gff for
FMO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23050232..23050441 | 749..951 | 95 | <- | Minus |
| 3R | 23050504..23050750 | 502..748 | 100 | <- | Minus |
| 3R | 23050815..23051124 | 192..501 | 100 | <- | Minus |
| 3R | 23052922..23052948 | 165..191 | 100 | <- | Minus |
| 3R | 23053012..23053048 | 128..164 | 100 | <- | Minus |
| 3R | 23053119..23053199 | 47..127 | 100 | <- | Minus |
| 3R | 23053357..23053394 | 9..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:25 Download gff for
FMO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18875954..18876163 | 749..951 | 95 | <- | Minus |
| arm_3R | 18876226..18876472 | 502..748 | 100 | <- | Minus |
| arm_3R | 18876537..18876846 | 192..501 | 100 | <- | Minus |
| arm_3R | 18878644..18878670 | 165..191 | 100 | <- | Minus |
| arm_3R | 18878734..18878770 | 128..164 | 100 | <- | Minus |
| arm_3R | 18878841..18878921 | 47..127 | 100 | <- | Minus |
| arm_3R | 18879079..18879116 | 9..46 | 100 | | Minus |
