FMO05477.5prime Sequence
1215 bp (1047 high quality bases) assembled on 2008-08-25
> FMO05477.5prime
CAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGGTCTGCCTG
GCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAGGAAGGCGA
GGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTCATACAGCA
ATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGTCCTGCAAG
GTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTGCGCAAGCA
GATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGACGAATCAG
ATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAATGCGACGAG
GAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAGCACCAGGA
AGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGATCAGCAGG
AGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACACCATCGAG
ATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAGCAGTACGA
AGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAAGGCAAGCC
TGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCCTAACAACA
TCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGCGGAAACTT
TTACGAAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCATGACGGC
ATCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGGTGCGCGA
GCAACTGAGGAAGCACATGTACTCCCACACGGGCAGCAAACCCTATAAGT
GCAGCTTCTGCAGTCGTCAATTCTTCTACGAAAGTGTTCTCAAGTCTCAT
GAAAATGTTCACCGTGGCATCAAGCCCTACGTGTGCAAGTGTGCGACAAA
GCGTTTGCCTACGCTCACTCCCTGACAGCACGAGCTCATCCACTCGGACA
CAAACTGTACGCTGCGATTATTGCACAAGGACTTCGTTCTGCTGCATCAA
TGCGCAGCACGAGGGAGAACAAACTGCACCAGAACGCGTATGCTGCCGAG
AGCATGAGGTGGATGTGCGGCAGGGGGCGGAACGAGATTCGATCAGGCTA
CGCAGCCTTTCTGACCATTCTGTTGGCGCGCGCTCCAGAGTTAGTGCAAA
TTCCTATATTCTATA
FMO05477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zif-RC | 1455 | CG10267-RC | 140..1254 | 9..1113 | 5200 | 98.5 | Plus |
| Zif-RB | 1394 | CG10267-RB | 79..1193 | 9..1113 | 5200 | 98.5 | Plus |
| Zif-RA | 1463 | CG10267-RA | 148..1262 | 9..1113 | 5200 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6457493..6458109 | 153..770 | 3040 | 99.8 | Plus |
| 3R | 32079331 | 3R | 6457287..6457430 | 9..152 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 6458167..6458301 | 771..905 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 6458403..6458591 | 906..1087 | 490 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:58 has no hits.
FMO05477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:46 Download gff for
FMO05477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zif-RA | 144..1266 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:16 Download gff for
FMO05477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10267-RA | 130..1252 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:52 Download gff for
FMO05477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zif-RA | 144..1266 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:52 Download gff for
FMO05477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6457283..6457430 | 1..152 | 97 | -> | Plus |
| 3R | 6457493..6458109 | 153..770 | 99 | -> | Plus |
| 3R | 6458167..6458301 | 771..905 | 100 | -> | Plus |
| 3R | 6458403..6458625 | 906..1117 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:46 Download gff for
FMO05477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2283005..2283152 | 1..152 | 97 | -> | Plus |
| arm_3R | 2283215..2283831 | 153..770 | 99 | -> | Plus |
| arm_3R | 2283889..2284023 | 771..905 | 100 | -> | Plus |
| arm_3R | 2284125..2284347 | 906..1117 | 92 | | Plus |
