FMO05478.5prime Sequence
1253 bp (1038 high quality bases) assembled on 2008-08-25
> FMO05478.5prime
CAGTCGACATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGAAGCGCCCC
ATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTGGCCCTGAC
CAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATCCCTGAAAC
GGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAACCGAAACGT
GACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCCAGCTCTAG
CTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGATTACCTGC
CCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGGGATATACC
ACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTTGTGATGGC
CGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCAGCCCCATC
TGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCCAGTCGGTC
TACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCCGATCTGGA
AACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACATCCCACTGC
CGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCAGCGGTGCC
AGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATGAGTGCCTC
GTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGCTTCAAGTGCG
ACGAGTGCCAGAAGATGTACTCCACCTCGATGGGCCTGTCCAAGCACCGT
CAGTTCCACTGCCCGGCAGCCGAGTGTAATCAGGAGAAGAAGACCCACTC
CTGCGAGGAGTGTGGAAAGCTGTACACCACCATTGGAGCCCTGAGATGCA
CATCCGCACCCACACTCTGCCTGCAAGTGCCCATTTGCGCAGGCTTCTCT
CGACCCTGGCTGCTCAGGGACACATCCGCACCCACACTGGAGAGAAGCTT
TCAGTGCCCGACTGCCACGATCTTTGCGACGTCGACCTGGCGAGCTCATC
AGCAGACCCCGGTGACGTCAGAGTACGCCTGCCAGGTGTGCCAAATCTTT
CTCAGGATGTCCGTCCTGACAGCTCAGCTCCACTGCACATACATATTGCG
GCAGCTTCGACATCTGGCGCGGGCCAGGTGAGTGCCTAATCTATAACTTA
GGCTCTGATAGTTACGCTGATCACAACCTACGCCTAGTCTATCCGTAGTG
ATA
FMO05478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sna-RA | 1668 | CG3956-RA | 154..1285 | 9..1119 | 5040 | 97.6 | Plus |
| wor-RA | 2222 | CG4158-RA | 1210..1447 | 768..998 | 250 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15477111..15478107 | 998..9 | 4660 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:16 has no hits.
FMO05478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:34 Download gff for
FMO05478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sna-RA | 146..1285 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:17 Download gff for
FMO05478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sna-RA | 155..1294 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:43 Download gff for
FMO05478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sna-RA | 146..1285 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:43 Download gff for
FMO05478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15477005..15478115 | 1..1093 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:34 Download gff for
FMO05478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15477005..15478115 | 1..1093 | 97 | | Minus |
