FMO05479.5prime Sequence
1240 bp (1042 high quality bases) assembled on 2008-08-25
> FMO05479.5prime
CAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGAAATTGCAA
CATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAATCGCAGTG
TTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGTCCACGCCA
ACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCGAACTTAAT
AAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGGAGCATTTT
TAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCGTCGGTCCA
TAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATATGTCATTTG
GTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAACTACTTGCG
GAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGAGATGCGAA
ATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCTCCAGCTAT
GCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTATCTTAACAG
CGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCCCGTTCCGC
TCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACGACGAAGGG
GATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCACTCCCCGAG
CTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGACCCTGCAT
CGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCATCATCAATC
ATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAGAGCGACAG
CAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGCATTGCCAA
TCATGGATTTCGATGACGCATTCCTGCAGGGACTGCGTCCCGAATCAGCA
CATGAACTTCAACAGAAGCTGTACTTCAGCGACGTGTGTACGACTGCTTG
GCGAGATATCCATTCGAGCAGTCAGCCTCATCAACCACCAGCGCAGCCGC
ATCCCAGAGATGTCATGAACGCTATCCACTACTCAGTCTCTCCTCGCGAT
CCCTACAGCAATGGACCTATGCTCGCCACTGCAAAGCTTGGTCAGCACTC
AAGATTGGCAAGCTTCGAACATCGTGGCGCGGGCCAGTAAGGGCTAACTT
ATCATAACTTAATCATATCAACACATACTAGAAGTTATCA
FMO05479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..1156 | 8..1123 | 5140 | 98 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..881 | 8..869 | 4310 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 925..1204 | 865..1123 | 840 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14411495..14411811 | 452..768 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 8..264 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 265..456 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412254..14412452 | 868..1057 | 555 | 93.5 | Plus |
3L | 28110227 | 3L | 14412033..14412136 | 766..869 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 9..91 | 131 | 66.3 | Plus |
FMO05479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:48 Download gff for
FMO05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 12..1146 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:19 Download gff for
FMO05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 12..1146 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:35 Download gff for
FMO05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 12..1146 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:35 Download gff for
FMO05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14412256..14412520 | 870..1114 | 92 | == | Plus |
3L | 14410637..14410901 | 1..264 | 98 | -> | Plus |
3L | 14411081..14411272 | 265..456 | 100 | -> | Plus |
3L | 14411500..14411810 | 457..767 | 100 | -> | Plus |
3L | 14412035..14412136 | 768..869 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:48 Download gff for
FMO05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14404181..14404372 | 265..456 | 100 | -> | Plus |
arm_3L | 14403737..14404001 | 1..264 | 98 | -> | Plus |
arm_3L | 14404600..14404910 | 457..767 | 100 | -> | Plus |
arm_3L | 14405135..14405236 | 768..869 | 100 | -> | Plus |
arm_3L | 14405356..14405620 | 870..1114 | 92 | == | Plus |