Clone FMO05479 Report

Search the DGRC for FMO05479

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:54
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3919-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05479.5prime Sequence

1240 bp (1042 high quality bases) assembled on 2008-08-25

> FMO05479.5prime
CAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGAAATTGCAA
CATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAATCGCAGTG
TTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGTCCACGCCA
ACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCGAACTTAAT
AAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGGAGCATTTT
TAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCGTCGGTCCA
TAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATATGTCATTTG
GTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAACTACTTGCG
GAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGAGATGCGAA
ATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCTCCAGCTAT
GCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTATCTTAACAG
CGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCCCGTTCCGC
TCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACGACGAAGGG
GATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCACTCCCCGAG
CTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGACCCTGCAT
CGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCATCATCAATC
ATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAGAGCGACAG
CAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGCATTGCCAA
TCATGGATTTCGATGACGCATTCCTGCAGGGACTGCGTCCCGAATCAGCA
CATGAACTTCAACAGAAGCTGTACTTCAGCGACGTGTGTACGACTGCTTG
GCGAGATATCCATTCGAGCAGTCAGCCTCATCAACCACCAGCGCAGCCGC
ATCCCAGAGATGTCATGAACGCTATCCACTACTCAGTCTCTCCTCGCGAT
CCCTACAGCAATGGACCTATGCTCGCCACTGCAAAGCTTGGTCAGCACTC
AAGATTGGCAAGCTTCGAACATCGTGGCGCGGGCCAGTAAGGGCTAACTT
ATCATAACTTAATCATATCAACACATACTAGAAGTTATCA

FMO05479.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 1358 CG3919-RB 20..1156 8..1123 5140 98 Plus
CG3919-RC 1406 CG3919-RC 20..881 8..869 4310 100 Plus
CG3919-RC 1406 CG3919-RC 925..1204 865..1123 840 91.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14411495..14411811 452..768 1570 99.7 Plus
3L 28110227 3L 14410645..14410901 8..264 1285 100 Plus
3L 28110227 3L 14411081..14411272 265..456 960 100 Plus
3L 28110227 3L 14412254..14412452 868..1057 555 93.5 Plus
3L 28110227 3L 14412033..14412136 766..869 520 100 Plus
Blast to na_te.dros performed 2014-11-28 21:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6822..6909 9..91 131 66.3 Plus

FMO05479.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:48 Download gff for FMO05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 12..1146 1..1114 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:19 Download gff for FMO05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 12..1146 1..1114 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:35 Download gff for FMO05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 12..1146 1..1114 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:35 Download gff for FMO05479.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14412256..14412520 870..1114 92 == Plus
3L 14410637..14410901 1..264 98 -> Plus
3L 14411081..14411272 265..456 100 -> Plus
3L 14411500..14411810 457..767 100 -> Plus
3L 14412035..14412136 768..869 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:48 Download gff for FMO05479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14404181..14404372 265..456 100 -> Plus
arm_3L 14403737..14404001 1..264 98 -> Plus
arm_3L 14404600..14404910 457..767 100 -> Plus
arm_3L 14405135..14405236 768..869 100 -> Plus
arm_3L 14405356..14405620 870..1114 92 == Plus