FMO05480.5prime Sequence
1198 bp (1004 high quality bases) assembled on 2008-08-25
> FMO05480.5prime
CAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCATGCGCGGC
GGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCACCCCTTCGA
TCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGCCGGCGCCG
TTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACCAGGACCTG
AGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTGACCAAGGT
GCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCTGACAACTT
GTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGGGCACCATA
CTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAAACCCTGCC
CACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGCCGACCTGA
AGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGCACACCGTA
CAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCCAAGGTGCG
CATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGAGCCTGAGA
TCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCATTCGGCAC
ACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAGGTGCTCAT
TCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTCGCCGCTGT
CGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGAACAACCCG
TCGCGACAGGCACTGCCCATCAACCTGGGCCTTCCGTCGCGTCTTTCAGC
TACTCTCCGCCGGGCTCTTCCTGCCGGGCTCGGCCGGCATCACGGATCCC
ACCGAGCCGGGACACATCCGTGTGCACACTGCCATGACATGAGCAGCAGA
TGTGTGCTGCTACACATCGCAGACCTACTGCTGGTGCTGGCCACGGCGGA
TACAACACATTTTGGGACTGGAGGGCAACACCAGCGTGGGCGCCGAAATG
TCGTCTGGACGGCTGTGCATTTCCCGCTGACCGCTGTCTACAAAGCACGG
ACGAGGAGGGCGACCTCAGGAGGCTCCGGATCGGAATGGAACCAAAAGGC
CGCCAATGGTCAGGCAACTCTGAACTTCTTTGGCGCGGGCCGGTAGGG
FMO05480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 82..1213 | 9..1123 | 5130 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12427987..12428784 | 1091..303 | 3375 | 97.7 | Minus |
| 3R | 32079331 | 3R | 12429036..12429201 | 174..9 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12428846..12428975 | 302..173 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:39 has no hits.
FMO05480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:27 Download gff for
FMO05480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..1213 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:20 Download gff for
FMO05480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 73..1211 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:19 Download gff for
FMO05480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..1213 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:19 Download gff for
FMO05480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12427987..12428784 | 303..1091 | 98 | <- | Minus |
| 3R | 12428846..12428974 | 174..302 | 100 | <- | Minus |
| 3R | 12429037..12429208 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:27 Download gff for
FMO05480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8253709..8254506 | 303..1091 | 98 | <- | Minus |
| arm_3R | 8254568..8254696 | 174..302 | 100 | <- | Minus |
| arm_3R | 8254759..8254930 | 1..173 | 97 | | Minus |
