FMO05481.5prime Sequence
1233 bp (987 high quality bases) assembled on 2008-08-25
> FMO05481.5prime
CAGTCGACATGAGCGATGTGCTAAAGAGCTCCCAGGAGCGATCCCGCAAG
CGTCGTTTGCTTTTAGCGCAAACTTTGGGCTTGTCGAGCGTCGACGATCT
GAAAAAGGCTTTGGGTAATGCCGAAGACATTAACAGTAGTCGCCAGCTGA
ATTCCGGTGGGCAACGCGAGGAGGAGGATGGTGGCGCCTCTTCCTCCAAG
AAAACCCCCAATGAAATCATCTATAGGGACTCCTCGACCTTCCTGAAGGG
AACCCAGTCTTCCAATCCGCACAATGACTACTGCCAGCACTTTGTGGACA
CCGGTCAGCGTCCCCAGAACTTCATCCGTGATGTCGGCCTAGCTGACCGC
TTCGAGGAGTATCCCAAGTTGAGGGAACTGATCAAACTGAAGGACAAACT
CATCCAAGACACCGCATCCGCACCTATGTACTTAAAGGCGGATCTGAAAT
CGCTAGATGTCAAGACGCTGGGCGCCAAGTTTGATGTTATTTTGATTGAG
CCGCCGCTAGAGGAATATGCCAGGGCAGCACCTTCTGTAGCCACTGTAGG
TGGGGCACCGCGGGTTTTCTGGAACTGGGATGATATACTTAATTTGGATG
TGGGCGAGATAGCTGCTCATCGTTCGTTTGTATTCCTTTGGTGCGGATCC
TCGGAGGGCTTGGACATGGGCCGCAACTGCCTGAAGAAGTGGGGATTCCG
GAGGTGCGAAGACATATGTTGGATACGGACCAACATTAACAAGCCCGGGC
ACTCCAAGCAACTTGAACCGAAAGCGGTCTTTCAACGCACCAAGGAACAC
TGCCTGATGGGGAATCAAAGGAACTGTTCGCCGCTCCACTGATGGCGATT
TTATCCATGCCAACGTGGACATTGATTTAATCATCTCAGAGGAAGAGGAG
TTTGGCAGCTTCGAGAAGCCCATCGAGATCTTTTCACATCATCGAACATT
TCTGCTTGGGTCGACGGCGTTTGCATCTGTTCGGCAGAGATTCGAGTATT
CGACCAGTTGGCTAACTGTTGGTCCGGAACTGACGACTCGAACTTCAACT
CGAGCTATAACAGACTACTTGCCTGAGCTTCCAGCCACGGATGCACTAGT
AGATTTGACTAACTGAGGCCAGAGTCCGCCCCGAAATGCCAAGTTTTAAA
AGGAAAGACGCTTCCAGTGACTGGAAGGCCAAACAGCTTTTCTAGACCAT
CTCTTTGTGCGCGCGCGCGCCCGAAGTAGATGG
FMO05481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7818-RA | 1407 | CG7818-RA | 118..1270 | 9..1155 | 5310 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8308682..8309198 | 75..591 | 2585 | 100 | Plus |
| 2L | 23513712 | 2L | 8309255..8309824 | 592..1155 | 2170 | 95.6 | Plus |
| 2L | 23513712 | 2L | 8308544..8308609 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:27 has no hits.
FMO05481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:01 Download gff for
FMO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 118..1188 | 9..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:21 Download gff for
FMO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 105..1175 | 9..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:13 Download gff for
FMO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 118..1188 | 9..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:13 Download gff for
FMO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8309255..8309714 | 592..1051 | 99 | == | Plus |
| 2L | 8308544..8308609 | 9..74 | 100 | -> | Plus |
| 2L | 8308682..8309198 | 75..591 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:01 Download gff for
FMO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8308544..8308609 | 9..74 | 100 | -> | Plus |
| arm_2L | 8308682..8309198 | 75..591 | 100 | -> | Plus |
| arm_2L | 8309255..8309714 | 592..1051 | 99 | == | Plus |
