FMO05485.5prime Sequence
1192 bp (912 high quality bases) assembled on 2008-08-25
> FMO05485.5prime
CAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGGCGACAGTC
GGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGACAACGAAAA
CTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGAGTTCGGAA
AATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGGCCGACAAA
GGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGCCGCAAGTT
TGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTTCTCCGTGA
AGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGCTGTTCGAC
TGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTACGAGATCAT
GTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCATGTGATCT
TCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCCGCTGCAAA
GATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCCGACAACAC
GTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGCAACCTGGAGG
ACGACTGGGACTTCCTGGCCCCCAAGAAGATCAAGGATCCCACCGCCACC
AAGCCCGAAGACTGGGACGATAGGGCCACCATTCCCGATCCCGATGACAA
GAAGCCCGAGGACTGGGACAAACCAGAGCACATTCCCGACCCAGATGCCA
CAAGCCTGAGGATTGGGACGATGAGATGGACGGCGAGTGGGAGCCACCGA
TGATCGACTACCCTGAGTTCAGGGGCGAGTTGCAGCCAAAGCAGCTGGAC
AACCCCAACTACAGGGCGCCTGGGGAGCATCCCGAGATCGCCAATCCCGA
GTATGTGGCCGGACGACAAGCTGTATCTGCGCAGAAAGTCTGCACCTGGG
CTTCGAATTCTCGGGCAGGTCAAGTTCCGGCACTATCTTCGAACACGTCT
GATCACGGAACAACGTTGAGCTGGCCGCTAAGCTGCTGCGAAGTCAAAAC
ACCAGCGGTCAAAGAAATGAGTAGCCCAGATGAGGTCACGCCAGATACAG
GGAGGAGGCAAAGCTTCGACGCAATGAGCAAGGATGCATAGTAGGGTATA
ACTAGCAGACAAATCAAGCATCGGCAATTGGCGACTCTTCTG
FMO05485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1677 | CG9429-RB | 85..1133 | 7..1053 | 4755 | 97.5 | Plus |
| Crc-RA | 1430 | CG9429-RA | 85..1133 | 7..1053 | 4755 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9629707..9630182 | 675..200 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 9629259..9629616 | 1032..674 | 1130 | 92.6 | Minus |
| 3R | 32079331 | 3R | 9630448..9630554 | 202..96 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 9630678..9630767 | 96..7 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:11 has no hits.
FMO05485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:55 Download gff for
FMO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..1140 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:24 Download gff for
FMO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 114..1174 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:01 Download gff for
FMO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..1140 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:01 Download gff for
FMO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9630449..9630553 | 97..201 | 100 | <- | Minus |
| 3R | 9630678..9630772 | 1..96 | 96 | | Minus |
| 3R | 9629228..9629615 | 675..1058 | 92 | <- | Minus |
| 3R | 9629708..9630180 | 202..674 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:55 Download gff for
FMO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5456171..5456275 | 97..201 | 100 | <- | Minus |
| arm_3R | 5456400..5456494 | 1..96 | 96 | | Minus |
| arm_3R | 5454950..5455337 | 675..1058 | 92 | <- | Minus |
| arm_3R | 5455430..5455902 | 202..674 | 100 | <- | Minus |
