FMO05486.5prime Sequence
1221 bp (1053 high quality bases) assembled on 2008-08-25
> FMO05486.5prime
CAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAACTACCGCAA
GAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGATCGTGCCCC
AGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTCGATGTCGG
TCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCGGCACCAAT
AGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAGTACGCCCC
GAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTTTCAGCTCG
AGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACGTGTTTACG
AGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGCATTCAGGT
TTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAAGGTTGGCC
CCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCGCCACCATG
CAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACTCACCTGGG
CTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAACCTTGCCG
CCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGTCGGGCTAC
TTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACATGGAATGGC
TGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGCCAATATGA
CGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCACTACTGGTGG
GATCTCCCGATCTGCATTCGCCCAACACATGCTCGCCTCACCACCAACAT
CGCCTGCCTCCGGGCACGCCTCCCAGCATCAACACATCCAACCGCTCACC
CCCCGCCACCTCAGGCGCCTCCTCAATGCCAGTTGGAGTCCAGCCTGCTC
AGCTTCTCCCAGCATCTGGTGGGATCGCCTTGACCCACAGCCTCGAGTCT
ATCGCCACCAGACTCCCCGTGGCCTGACTTTGTTCGCACTCTCCCAACGA
CAACTGCTCCACCATCGCAATAGCTCCGCCGCCACCTCCAAAGCTGCACG
GCCACCGAAGAAGGCGCACCTCCTTCATGGCCCCCTGCCTCTGAGGCAAA
GACCGACTGAACTGTACTGTTTGCTAATGCACTGCAAACTAGTTGAGTAA
CGCAGCACTTTTCTCATGAAC
FMO05486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| al-RA | 1806 | CG3935-RA | 411..1566 | 9..1144 | 5070 | 97.1 | Plus |
| Pph13-RA | 1880 | CG2819-RA | 575..717 | 301..443 | 265 | 79 | Plus |
| CG34340-RF | 2989 | CG34340-RF | 736..916 | 254..434 | 260 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 384551..384894 | 9..352 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 386305..386577 | 396..668 | 1365 | 100 | Plus |
| 2L | 23513712 | 2L | 386701..387140 | 666..1089 | 1310 | 93.9 | Plus |
| 2L | 23513712 | 2L | 578181..578323 | 301..443 | 265 | 79 | Plus |
| 2L | 23513712 | 2L | 385699..385748 | 351..400 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:50 has no hits.
FMO05486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:57 Download gff for
FMO05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| al-RA | 411..1566 | 9..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:26 Download gff for
FMO05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| al-RA | 407..1562 | 9..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:01 Download gff for
FMO05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| al-RA | 411..1566 | 9..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:01 Download gff for
FMO05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 386308..386576 | 399..667 | 100 | -> | Plus |
| 2L | 384551..384894 | 9..352 | 100 | -> | Plus |
| 2L | 385701..385746 | 353..398 | 100 | -> | Plus |
| 2L | 386703..387199 | 668..1144 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:57 Download gff for
FMO05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 384551..384894 | 9..352 | 100 | -> | Plus |
| arm_2L | 385701..385746 | 353..398 | 100 | -> | Plus |
| arm_2L | 386308..386576 | 399..667 | 100 | -> | Plus |
| arm_2L | 386703..387199 | 668..1144 | 93 | | Plus |
