FMO05487.5prime Sequence
1192 bp (958 high quality bases) assembled on 2008-08-25
> FMO05487.5prime
CAGTCGACATGACCACAATCGCGGATTTATTCACAAAGTATAATTGCACA
AATTGCCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCGGAGTGCGA
AAACTTCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGAGATCGGCG
CCCATCAAAACAACCACTCCTACCAGTTCATGGACACCGGCACTTCCATA
TTGAGTGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAGGAAATCCG
CCTGTTGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGAGGACATTA
GCAAGCACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGGAGTACGTG
AATAAGTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACGCCGGCCCA
GAGCCAGAGACCCCGCCTTATCGATCACACTGGAGACGACGACGCTGGTC
CTCTGGGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAATCAACTCC
GATGAGGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGCTTTGAGCG
GGAGTACGATCCCACGGCAGAGCAACTGATCTCGAACATCTCATTAAGCT
CCGAGGATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACGTTGACATA
TACACCCGCCGACTCAGAGAGCGTGCTCGCAGGAAACGGATGGTCAGGGA
CTATCAATTAGTATCAAATTTCTTCCGAAACAGAAATTACGCTCAGCAAC
AAGGACTCACCAAGGAGCAGCGCGAGTTTCGGGACAGATTTCGGGTCTAC
GCCCAGTTCTACACGTGTAACGAGTATGAGCGGCTATGGGATCACTGGAG
CGCGAAAAGGAACTGCGCATTCGACAGTCAGAGCTGTACCGATACCGGTA
TAATGGCCTGACCAAAATTCGCGGAATCACACATTTCGAGCAGCACGCCG
CACAGCGACGCACCGCTCTACAGGACATATGCATGCAGACCTCCACTGCT
AATAAACCGCCAACACGAGCGTCGAATGTCATAAGACATGTTAACCAGAC
CCACGCATACCTCATGAGTCATCGCGCAGCTTCTTGCACTCCCCAACGAA
TCGAAGTCATGTCAGCGCGCGAGGCAGTCAATCATCGAAGCAACGGTTCA
TGCGACGAAGGTTCGGCCAATATTGCCAAGAAAAAGATACTG
FMO05487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..1169 | 9..1063 | 4830 | 97.8 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..1169 | 9..1063 | 4830 | 97.8 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..1068 | 9..981 | 4760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238751..8239610 | 976..119 | 4090 | 99.4 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 2616..2651 | 1044..1009 | 117 | 80.6 | Minus |
FMO05487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:54 Download gff for
FMO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1062 | 9..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:27 Download gff for
FMO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1059 | 9..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:59 Download gff for
FMO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1062 | 9..976 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:59 Download gff for
FMO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8238751..8239606 | 123..976 | 99 | <- | Minus |
| 3R | 8240310..8240423 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:54 Download gff for
FMO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4064473..4065328 | 123..976 | 99 | <- | Minus |
| arm_3R | 4066032..4066145 | 9..122 | 100 | | Minus |
