FMO05488.5prime Sequence
1217 bp (890 high quality bases) assembled on 2008-08-25
> FMO05488.5prime
CAGTCGACATGTCGAAATCGGCGCTGAAACACCTAAAGAGCACCTGCCGC
GTATGCGCAAAGTATGCAAGCAACAAGCGGTCGCCGAAGTTATTCGAGCG
GAGCAACACAAAGATGATCGACAACATTGAGGCGCTCACAGGCCTTCGGC
TGGAGAACTACGGTTGCCTGCCGGATCAGATATGTGAATGCTGCAGCATG
GAACTGGCCTCCGCCGTTAAGCTGAGGGAGCGCTGCATCGCCGCCCAGCG
TGAGCTACTCTTGGGATTGACCGAGGAGCAACGCCAAGGCATCTCGGCCT
TCTACCGGGCGGCTGTCATGGGCGAGGATATTGTCCAGACGGTGAAGACG
CCCGACGATGATGAGGTCTATGCCACTTATCAGGAAATCGTATTGGAAGA
ACCTAAGGAAGAGATCGACGACACCAAGGTAGAGTACGATAATACCTACT
ACGAGGTGGCCGAGGGACACGCCGGCGAGGACGACGCAGCCTCCTTGATT
GAAGAGGCCGACTATGATTCCATAATGGCCGAAGACGAAGAGCAGCAGCA
AACGTTGGAGCTGGACGAAGACACCGAGCTAATTGTGGGCGACGTCAACG
ACGCGTACGTCTACGATTCGGATGATGAGGTGGCCGTTCTTGACAACGTG
CTGGATGATGAGTACGAGCATGAAAACATTGTCGTCAAGAAGTGTAGTCT
GCCGCCAAAGCCAAAGGTCCGGTCGGATGATGCGCGTCGTCGTGGCACCG
GCGGAGTATACATCTGCGAGCAGTGCGGCATCACATCAAGGGACGCATGT
CTTTGAACTTCACTGTCTTCGCCTTCGTGGGACAAGCATTTGGCTGCAAC
TCTGTCAGTCGCGCTTCTGCACAACTTCCTAGCTGAAACGCACATGCCAA
GCACACAGGAATAGCGAACAGTTTGCATGTAAGTACTTGGTGCCGCTGCT
TCCCAGACTACTCCACGCGCGTGAAGCATGACGTACCCACACATATGAGC
GCCACTTACGTCTGTGGTACTTGGCGCAAGGCCCTCATACCAGCTTATTC
TAGAACCATTGCTGAATATTCGGCGAGCGGACCTAAGGGCGATCTGGCGC
AAAGTCCCTTTTGCTGGCAACCACTGAACCCACGACTGCGTACCAGCACT
GGATAGCCGAATAACGATTCAGTAGCGACAAACTGGTACATCCTGAGTAG
GAGAGACATAGTCGTCG
FMO05488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| M1BP-RA | 1519 | CG9797-RA | 117..1238 | 9..1116 | 4685 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8730690..8731374 | 831..149 | 3280 | 99.3 | Minus |
| 3R | 32079331 | 3R | 8731442..8731582 | 149..9 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 8730425..8730612 | 1037..849 | 400 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:00 has no hits.
FMO05488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:55 Download gff for
FMO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9797-RA | 117..1158 | 9..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:29 Download gff for
FMO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9797-RA | 113..1154 | 9..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:40 Download gff for
FMO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M1BP-RA | 117..1158 | 9..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:40 Download gff for
FMO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8730670..8731373 | 150..848 | 98 | <- | Minus |
| 3R | 8731442..8731582 | 9..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:55 Download gff for
FMO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4556392..4557095 | 150..848 | 98 | <- | Minus |
| arm_3R | 4557164..4557304 | 9..149 | 100 | | Minus |
