FMO05490.5prime Sequence
1223 bp (1020 high quality bases) assembled on 2008-08-25
> FMO05490.5prime
CAGTCGACATGATCTCGCCGGAACAAGAGGAGGTCAACATGGTCCTGGAT
CGCCATGTACGGCAGAACATAAAGGACCTGATGCACGAGGCTCATGTCCA
TGCGAGCCTGCTGAACAACGAGGGACGTGACCGTTTCCACTCGGACTCCA
GTTTGGACCAGGATTCCCTTCACGCCGTCGTTGGGAATGATCTGAGCACC
GAACAAGGCGCCAACCAGGTGCAAAACTACCACGACATGATGGTGGACAG
TGAACACCACGTCGACATTAATGGGTCGCTGCGCAAACGTCGCGGAAATC
TGCCCAAGTCATCTGTAAAGATTTTAAAGCGTTGGCTTTATGAGCACCGC
TATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCAGGAGGC
CAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCCGTCGCC
GCATTCTACCCGAGATGATCAGGCGCGAGGGCAACGATCCTCTGCACTTC
ACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAGATCAAG
TGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAAGTCCTG
CTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCCGGTGAG
ATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTATGTGCA
GGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGGACAGTG
TCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAGTCCTGT
GGGCCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCATGATTGGCA
GAGCGTTATAAAACTGTATTTGGGACTGAGGAAGTCAGCACTTCGGCTGG
CATAATCCAGGTACCTCTGGTTCTAAGCATCTGTTCAAATACCGCCATCT
GGAATCGCAATCAGACTGCGAAGCGTGACGTGAATCACAGTTGACAGACT
TTGAAAGCGAGCTGAATATAATACAGCCTCGAAATCCAGACAATCGATCC
TACCACTCCATCAACAGGACATGTGACAATCTTACAGGCGGACAAGGTGT
TACCGGCCAGCCGAGCCTGCCAAGTCAATTCTGTCCATCCAGGTCCGTCC
AATGAAGGCAGTACAGTCTCTATATCAATGACGTCCATGGCGGGCCAAAC
ATGACTCCGAATGATACAAATCG
FMO05490.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vis-RA | 1741 | CG8821-RA | 94..1202 | 9..1106 | 5220 | 98.7 | Plus |
| achi-RA | 2122 | CG8819-RA | 305..1419 | 9..1106 | 4695 | 95.6 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 9..760 | 3295 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12509777..12510267 | 613..123 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 12513566..12514062 | 613..123 | 2090 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 762..611 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 762..611 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12510324..12510439 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12508893..12508997 | 862..758 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12512682..12512786 | 862..758 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12508712..12508833 | 980..862 | 460 | 97.5 | Minus |
| 2R | 25286936 | 2R | 12514132..12514244 | 121..9 | 445 | 92.9 | Minus |
| 2R | 25286936 | 2R | 12512501..12512622 | 980..862 | 430 | 95.9 | Minus |
| 2R | 25286936 | 2R | 12508519..12508638 | 1101..987 | 275 | 93.4 | Minus |
| 2R | 25286936 | 2R | 12512308..12512427 | 1101..987 | 245 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:35:10 has no hits.
FMO05490.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:08 Download gff for
FMO05490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 172..1293 | 1..1115 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:30 Download gff for
FMO05490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 363..1484 | 1..1115 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:09 Download gff for
FMO05490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 89..1210 | 1..1115 | 98 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:09 Download gff for
FMO05490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12509571..12509719 | 612..760 | 100 | <- | Minus |
| 2R | 12508712..12508833 | 863..980 | 96 | <- | Minus |
| 2R | 12508893..12508994 | 761..862 | 100 | <- | Minus |
| 2R | 12509779..12510266 | 124..611 | 100 | <- | Minus |
| 2R | 12510325..12510444 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:08 Download gff for
FMO05490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8396217..8396338 | 863..980 | 96 | <- | Minus |
| arm_2R | 8396398..8396499 | 761..862 | 100 | <- | Minus |
| arm_2R | 8397076..8397224 | 612..760 | 100 | <- | Minus |
| arm_2R | 8397284..8397771 | 124..611 | 100 | <- | Minus |
| arm_2R | 8397830..8397949 | 1..123 | 96 | | Minus |
