FMO05491.5prime Sequence
1182 bp (1008 high quality bases) assembled on 2008-08-25
> FMO05491.5prime
CAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGATTGCAGCAG
CAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGTTTACCCGA
TCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTATGCCACCGC
CGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCAAGCTGGAG
AATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAGATGATCAT
CACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTCCCTCAGTG
GACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGGTGCCCATT
GGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCGGCCGGAGG
AGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGAGAGTCCAG
CCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCAAAGTGAAA
TTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTGGCCAGCAT
GCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGATCTCGGCC
AGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGACGGAGTTT
ATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTGAGATCGAC
AACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTCGAGATGCAA
ACGGAAGATCAATGACTCGCCACCGCCAACGCAGCCCGAGGCAAACCAGG
TGGATCGAGCCCGGTGACATCGCCGTTAGCCAAACGGTTGCGACTCGTGG
AGGAATTTCCCCAGCACCATCATCACCAGAGTCATCACAGTGTTCCTATG
CAGCGTCACTATCTGCTGGATGCTCTGGAGCCAATTCTATGTGCAGCGCA
CGCGCGGCATCGAGTATGCCAGCACATCGTGTGCTTATCCAGTTGGGCTA
CACACGCATCGCTGCTTCTCTGTTCGTCTCTCGCGTCGACGACGCATCTG
CTGCGACGAAGCCAATGCATGCGACCTTGAAATGGTGACGGACGCTGTCC
TCGGCCTCATTCGCGTCACATGTCATGCGTTCTCTTACACGATCGCAATG
CCAACGAGCGCAACACTTTCAGATATCTCTCG
FMO05491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-RA | 1671 | CG5093-RA | 123..1134 | 9..1005 | 4685 | 98.5 | Plus |
| Doc1-RB | 1339 | CG5133-RB | 138..728 | 165..757 | 1480 | 83.5 | Plus |
| Doc1-RA | 1526 | CG5133-RA | 325..915 | 165..757 | 1480 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9005772..9006042 | 263..533 | 1355 | 100 | Plus |
| 3L | 28110227 | 3L | 9006361..9006624 | 669..930 | 1220 | 99.2 | Plus |
| 3L | 28110227 | 3L | 9043385..9043642 | 263..520 | 870 | 89.1 | Plus |
| 3L | 28110227 | 3L | 9005470..9005636 | 99..265 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 9006159..9006296 | 534..671 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 9014716..9014937 | 525..304 | 495 | 81.5 | Minus |
| 3L | 28110227 | 3L | 9005318..9005408 | 9..99 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 9014492..9014626 | 671..537 | 405 | 86.7 | Minus |
| 3L | 28110227 | 3L | 9042116..9042196 | 183..263 | 240 | 86.4 | Plus |
| 3L | 28110227 | 3L | 9043724..9043861 | 534..671 | 225 | 77.5 | Plus |
| 3L | 28110227 | 3L | 9013533..9013624 | 759..669 | 215 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:13 has no hits.
FMO05491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:35 Download gff for
FMO05491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc3-RA | 123..1143 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:32 Download gff for
FMO05491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc3-RA | 121..1141 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:29 Download gff for
FMO05491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc3-RA | 123..1143 | 9..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:29 Download gff for
FMO05491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9006159..9006296 | 534..671 | 100 | -> | Plus |
| 3L | 9006364..9006721 | 672..1012 | 95 | | Plus |
| 3L | 9005318..9005408 | 9..99 | 100 | -> | Plus |
| 3L | 9005471..9005636 | 100..265 | 100 | -> | Plus |
| 3L | 9005775..9006042 | 266..533 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:35 Download gff for
FMO05491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8999259..8999396 | 534..671 | 100 | -> | Plus |
| arm_3L | 8998418..8998508 | 9..99 | 100 | -> | Plus |
| arm_3L | 8998571..8998736 | 100..265 | 100 | -> | Plus |
| arm_3L | 8998875..8999142 | 266..533 | 100 | -> | Plus |
| arm_3L | 8999464..8999821 | 672..1012 | 95 | | Plus |
