FMO05492.5prime Sequence
1165 bp (1009 high quality bases) assembled on 2008-08-25
> FMO05492.5prime
CAGTCGACATGATCTCGCCGGAACAAGAAGAGGTCAACATGGTCCTGGAT
CGCCATGTACGGCAGAATATCCAGGACATGATGCACGAGGCTCATGTCCA
GGCGAGCCTGCTGGAGAACGAAGGACGCGGCCGTTTCCACTCGGACTCAA
GTTTGGACCAGGATTCTCTTCACGCTGACGTCATCGTGGAGGAGGATCAG
AGCACCGAACACGGCGCCAACCAGGTGCAAAACTACCACGACATGATGGT
GGACAGTGAACACCACATCGACATAAATGGGTCGCTGCGCAAACGTCGTG
GAAATCTTCCCAAGACCTCTGTAAAGATTTTAAAGCGTTGGCTTTATGAG
CACCGCTATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCA
GGAGGCCAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCC
GTCGCCGCATTCTACCGGAGATGATCAGGCGCGAGGGCAACGATCCTCTG
CACTTCACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAG
ATCAAGTGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAA
GTCCTGCTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCC
GGTGAGATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTA
TGTGCAGGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGG
ACAGTGTCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAG
TCCTGTGGGCCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCATGA
TTGGCAGAGCGTTATAAAAACTTTTATTTGGTACTGAGGAAGTCAGCACT
TCGGCTGGCAATAATCCAGGTACCTCTGGTTCTAGGGATCTGTTCAGATA
CCGCCATCTGATCGCATCAGACTGCGAGCGTGACGTGATCACAGTTGACT
GACTTTGAAGCGAGCTGAATAGAATAAGCTCAGATCAACATCGATCTACA
CTCATCAAGACTGTGACATCTAGCGACGGGTCTACGGGCGAGCCAGCCTG
CCCGTCATTTCGCTATGCAGCAAGTCATGAGTGTCAGTACCAGGTCTCTA
TATATATGGAACGTC
FMO05492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| achi-RA | 2122 | CG8819-RA | 305..1330 | 9..1026 | 4880 | 98.9 | Plus |
| vis-RA | 1741 | CG8821-RA | 94..1113 | 9..1026 | 4325 | 95.5 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 9..766 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12513566..12514063 | 619..122 | 2490 | 100 | Minus |
| 2R | 25286936 | 2R | 12509777..12510268 | 619..122 | 2095 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 768..617 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 768..617 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12514129..12514244 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12508893..12508997 | 868..764 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12512682..12512786 | 868..764 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12510327..12510439 | 121..9 | 445 | 92.9 | Minus |
| 2R | 25286936 | 2R | 12512530..12512617 | 960..875 | 340 | 97.7 | Minus |
| 2R | 25286936 | 2R | 12508741..12508828 | 960..875 | 310 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:04 has no hits.
FMO05492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:47 Download gff for
FMO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 300..1343 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:33 Download gff for
FMO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 289..1332 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:41 Download gff for
FMO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 300..1343 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:41 Download gff for
FMO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12512391..12512434 | 986..1026 | 93 | <- | Minus |
| 2R | 12512501..12512622 | 869..985 | 93 | <- | Minus |
| 2R | 12512682..12512783 | 767..868 | 100 | <- | Minus |
| 2R | 12513360..12513508 | 618..766 | 100 | <- | Minus |
| 2R | 12513568..12514061 | 124..617 | 100 | <- | Minus |
| 2R | 12514130..12514249 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:47 Download gff for
FMO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8399896..8399939 | 986..1026 | 93 | <- | Minus |
| arm_2R | 8400006..8400127 | 869..985 | 93 | <- | Minus |
| arm_2R | 8400187..8400288 | 767..868 | 100 | <- | Minus |
| arm_2R | 8400865..8401013 | 618..766 | 100 | <- | Minus |
| arm_2R | 8401073..8401566 | 124..617 | 100 | <- | Minus |
| arm_2R | 8401635..8401754 | 1..123 | 96 | | Minus |
