FMO05493.5prime Sequence
1225 bp (1000 high quality bases) assembled on 2008-08-25
> FMO05493.5prime
ATAAAACGAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTG
CCCTACACACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGC
GGGCCAGCCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACC
ACCAGTTCCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCC
GCTGCCCACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGC
GGCGGCCTCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATA
ACTTCGTTCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCAC
CACCATCATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAG
CAGTAGCGGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCA
GCATCGGCGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACC
GATGGAGGACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGA
AGGTCTGCCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCC
CGGGGGCGCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCAT
TTGAGTGCCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAG
CCCATCCACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACA
ACAGGACATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCC
GCCTATCCAGCACAACCACAACCAGGCAAACCCGCACCAAGGATAAGTAC
CGCGTGGTGTACACCGACTTCCAGCGCCTGGAGCTGGAGAAGGAGTACTG
CCCTCCGCTACATCACCATCCGGCGGAGAGCGAGCTCGCCAGACGCTGTC
GCTGTCGGAGCGCAGGTTAGATCTTGGTTCAGAACCGCCGCGCCAAGGAG
CCGCAGCAGACAGGAGGTTAGCGATCGAACGTGATGGGCGTGGGAGGGCA
GCATGCGACTACAGGCAGCTGCCTGACGGCAAGCGAGGCTGGGGAGACTG
ACCGTCCACTCGCTGGCCCATCGAGTGACCATGCGCAGGACTCCGCATGC
CCCTGCATCCACCTGGCGCCAAGCACTCCTTTGCGCGGGGGGTCCTTCAC
TAGCTGCACGACGACAAGTGCTCCC
FMO05493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cad-RB | 2353 | CG1759-RB | 215..1295 | 24..1092 | 4895 | 97.8 | Plus |
| cad-RA | 2516 | CG1759-RA | 378..1458 | 24..1092 | 4895 | 97.8 | Plus |
| cad-RC | 2570 | CG1759-RC | 378..1179 | 24..825 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20771108..20771910 | 24..826 | 4015 | 100 | Plus |
| 2L | 23513712 | 2L | 20781802..20782066 | 828..1082 | 655 | 90.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5072..5139 | 6..71 | 119 | 66.2 | Plus |
FMO05493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:08 Download gff for
FMO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 373..1500 | 19..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:34 Download gff for
FMO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RB | 210..1337 | 19..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:11 Download gff for
FMO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 373..1500 | 19..1128 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:11 Download gff for
FMO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20771103..20771909 | 19..825 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:08 Download gff for
FMO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20771103..20771909 | 19..825 | 99 | -> | Plus |
