FMO05504.5prime Sequence
641 bp (641 high quality bases) assembled on 2008-08-25
> FMO05504.5prime
CAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGTTTCCGAGC
TGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTACTGCCATC
CAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGATATGTACT
GGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTCACTCCGGC
GTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCATTTCCGTT
TACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTTGGGCGATC
AGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACTTTACGTAC
GAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTCCGTGGCGA
CCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGGCTCATTAA
CTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATCGTCTAGCG
CATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCAAAAGAATG
GCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCAAGAGCGCG
AAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCAT
FMO05504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7222-RB | 1395 | CG7222-RB | 107..721 | 9..623 | 3075 | 100 | Plus |
| CG7222-RA | 1523 | CG7222-RA | 235..849 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10814282..10814591 | 146..455 | 1550 | 100 | Plus |
| 2R | 25286936 | 2R | 10814077..10814214 | 9..146 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 10814872..10814962 | 454..544 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 10815029..10815107 | 545..623 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:02 has no hits.
FMO05504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:14 Download gff for
FMO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:38 Download gff for
FMO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 227..847 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:46 Download gff for
FMO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:46 Download gff for
FMO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10814071..10814214 | 1..146 | 97 | -> | Plus |
| 2R | 10814283..10814591 | 147..455 | 100 | -> | Plus |
| 2R | 10814874..10814962 | 456..544 | 100 | -> | Plus |
| 2R | 10815029..10815107 | 545..623 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:14 Download gff for
FMO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6701576..6701719 | 1..146 | 97 | -> | Plus |
| arm_2R | 6701788..6702096 | 147..455 | 100 | -> | Plus |
| arm_2R | 6702379..6702467 | 456..544 | 100 | -> | Plus |
| arm_2R | 6702534..6702612 | 545..623 | 100 | | Plus |
