FMO05506.5prime Sequence
515 bp (515 high quality bases) assembled on 2008-08-25
> FMO05506.5prime
ATTATACGAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGC
ATGTCCGGCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGAT
CCTGGACAGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCG
GCAAGGAATCCGAAAATGAGCTGATGCAAAACAAATCGACAAGCAACGGT
GGAACGGTCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTT
CAACGACGACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACG
AGATCGATACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACG
GCAGTTAGTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAA
GAAGGAGGAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCG
ATGGCGATGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTGCA
AGCTTTCTAGACCAT
FMO05506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sh3beta-RB | 1515 | CG8582-RB | 327..800 | 24..497 | 2340 | 99.6 | Plus |
| Sh3beta-RA | 1419 | CG8582-RA | 231..704 | 24..497 | 2340 | 99.6 | Plus |
| Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 24..494 | 2325 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7367556..7367986 | 497..67 | 2125 | 99.5 | Minus |
| 3L | 28110227 | 3L | 7368886..7368934 | 72..24 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:46 has no hits.
FMO05506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:13 Download gff for
FMO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh3beta-RA | 221..711 | 14..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:40 Download gff for
FMO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh3beta-RB | 274..764 | 14..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:23 Download gff for
FMO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh3beta-RA | 221..711 | 14..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:23 Download gff for
FMO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7367549..7367984 | 69..505 | 98 | <- | Minus |
| 3L | 7368890..7368944 | 14..68 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:13 Download gff for
FMO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7360649..7361084 | 69..505 | 98 | <- | Minus |
| arm_3L | 7361990..7362044 | 14..68 | 92 | | Minus |
