FMO05513.5prime Sequence
668 bp (668 high quality bases) assembled on 2008-08-25
> FMO05513.5prime
CAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGTTCAAAGTT
GTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTCTCACGTTT
CACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGGCGTTGAGT
TTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAGCGCAAATC
TGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCTGCCTACTA
CCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAAGCATCTGA
CCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACCATGCCGAC
CAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTGCGGCACTT
GCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCGCAACGGCT
TGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTGAAACGGCA
TTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAGAAACAAAT
CAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGTGGAGCCCA
TCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGTGCTGTCAG
GCAAGCTTTCTAGACCAT
FMO05513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab11-RA | 1815 | CG5771-RA | 409..1050 | 9..650 | 3150 | 99.4 | Plus |
| Rab11-RB | 1627 | CG5771-RB | 221..862 | 9..650 | 3150 | 99.4 | Plus |
| Rab8-RC | 2043 | CG8287-RC | 751..843 | 194..286 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21114751..21115101 | 169..519 | 1725 | 99.4 | Plus |
| 3R | 32079331 | 3R | 21115248..21115381 | 517..650 | 655 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21113944..21114069 | 47..172 | 615 | 99.2 | Plus |
| 3R | 32079331 | 3R | 21111816..21111855 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:03 has no hits.
FMO05513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:43 Download gff for
FMO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab11-RB | 214..862 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:47 Download gff for
FMO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab11-RA | 403..1051 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:11 Download gff for
FMO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab11-RB | 214..862 | 1..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:11 Download gff for
FMO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21111809..21111855 | 1..48 | 91 | -> | Plus |
| 3R | 21113946..21114067 | 49..170 | 99 | -> | Plus |
| 3R | 21114753..21115101 | 171..519 | 99 | -> | Plus |
| 3R | 21115251..21115381 | 520..650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:43 Download gff for
FMO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16937531..16937577 | 1..48 | 91 | -> | Plus |
| arm_3R | 16939668..16939789 | 49..170 | 99 | -> | Plus |
| arm_3R | 16940475..16940823 | 171..519 | 99 | -> | Plus |
| arm_3R | 16940973..16941103 | 520..650 | 99 | | Plus |
