FMO05515.5prime Sequence
1179 bp (941 high quality bases) assembled on 2008-08-25
> FMO05515.5prime
CAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCAAGAAGACG
GAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTCGGGCTGAA
GAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGTGCAGAAGC
AGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACAAGCGCAAG
GAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCGCTGATCTT
CAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCCCAAGTCGG
TGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCGACAAGTGC
AAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAGCGGTCCAT
TTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTGGGACGATG
CCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAAAGCAACGT
CCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTGGAAAAATC
AAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTGCATCTACC
GTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGAAGAAGGAG
GAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAGGAGCGCGC
TGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTTCCTCGCCT
GGAAGAAGCGCAAGATTGCCGAGAAGAATGCCAAGCTGGCTGCCGAGGAA
GAGCGCAGAAGAGTGACTTAAGCAAGGGCAAACAGTTCGGCATCTCTGGT
CGCGAAATGTTCAGCTTCAATCCGGATCTGGGTCGACGACGGACCCATGG
AGGAGGGCGACGCTGCTTTCGACGTCTACAACAGGAAGACGACGACGATA
TGCCGTCAGTTCAGAACTGATCTGCTGCCCTGTCGCTGCCGCCAGAGGTG
ACGTCCGGACATGCCTCACCATCGACTACTGACAGGCAACGAGCAGCATC
GCGAGCGAGACGCACGGCGACAGATGCATCGCTCTTGCCCGCCACGATGC
TGCCCATACACAGATCTTGTGACTGGCCGACTGGTACCTATGCATGAGCA
TGACCGCTCGACGTCGTGACGCGGCCGGT
FMO05515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8635-RB | 1447 | CG8635-RB | 134..1127 | 9..994 | 4690 | 98.7 | Plus |
| CG8635-RA | 1572 | CG8635-RA | 259..1252 | 9..994 | 4690 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8631072..8631508 | 515..79 | 2185 | 100 | Minus |
| 2R | 25286936 | 2R | 8630578..8631013 | 950..516 | 1990 | 98.6 | Minus |
| 2R | 25286936 | 2R | 8631632..8631704 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 4143..4201 | 774..832 | 115 | 70.5 | Plus |
| G6 | 2042 | G6 G6_DM 2042bp | 1378..1421 | 1017..974 | 112 | 72.7 | Minus |
FMO05515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:02 Download gff for
FMO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1264 | 9..1003 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:48 Download gff for
FMO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1264 | 9..1003 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:10 Download gff for
FMO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8635-RA | 259..1264 | 9..1003 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:10 Download gff for
FMO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8630515..8631013 | 516..1003 | 96 | <- | Minus |
| 2R | 8631072..8631506 | 81..515 | 100 | <- | Minus |
| 2R | 8631633..8631704 | 9..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:02 Download gff for
FMO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4518020..4518518 | 516..1003 | 96 | <- | Minus |
| arm_2R | 4518577..4519011 | 81..515 | 100 | <- | Minus |
| arm_2R | 4519138..4519209 | 9..80 | 100 | | Minus |
