FMO05517.5prime Sequence
831 bp (831 high quality bases) assembled on 2008-08-25
> FMO05517.5prime
CAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCAGAATCTCG
GATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCCAAGCAGCA
GCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGATGTGATCG
AGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCGAGAACAGT
GCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAGCATCCCAA
GCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAAGGAGCTGG
ACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCGATGGTGGC
GATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCCAGTTTCAC
CAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGAATATCCAG
TGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACTATGTGACC
ATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACCTGCCAGGA
GATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCAGAAGTTGA
CTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATGGAACGATC
GTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACTTTAAAAGA
GAAAATCGACATTCCAACACGCAACATAAATATAAGTGAATTTAGCCAAT
ATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGAAGGCTGGAAGTC
CATACGGAGCTTGGCAAGCTTTCTAGACCAT
FMO05517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1764-RA | 1395 | CG1764-RA | 104..908 | 8..813 | 3975 | 99.6 | Plus |
| CG1764-RB | 1780 | CG1764-RB | 475..1279 | 8..813 | 3975 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13295687..13296013 | 368..42 | 1635 | 100 | Minus |
| X | 23542271 | X | 13295158..13295383 | 689..464 | 1130 | 100 | Minus |
| X | 23542271 | X | 13294974..13295098 | 813..688 | 550 | 97.6 | Minus |
| X | 23542271 | X | 13295525..13295625 | 466..366 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:42 has no hits.
FMO05517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:52 Download gff for
FMO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RB | 467..1290 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:51 Download gff for
FMO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RA | 96..919 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:43 Download gff for
FMO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1764-RB | 467..1290 | 1..824 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:43 Download gff for
FMO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13295689..13296011 | 44..366 | 100 | <- | Minus |
| X | 13296513..13296555 | 1..43 | 93 | | Minus |
| X | 13294963..13295096 | 690..824 | 94 | <- | Minus |
| X | 13295158..13295382 | 465..689 | 100 | <- | Minus |
| X | 13295527..13295624 | 367..464 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:52 Download gff for
FMO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13188996..13189129 | 690..824 | 94 | <- | Minus |
| arm_X | 13189191..13189415 | 465..689 | 100 | <- | Minus |
| arm_X | 13189560..13189657 | 367..464 | 100 | <- | Minus |
| arm_X | 13189722..13190044 | 44..366 | 100 | <- | Minus |
| arm_X | 13190546..13190588 | 1..43 | 93 | | Minus |
