Clone FMO05518 Report

Search the DGRC for FMO05518

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:55
Well:18
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05518.5prime Sequence

497 bp (497 high quality bases) assembled on 2008-08-25

> FMO05518.5prime
CAGTCGACATGCTCGACATGGGCTTCGAGCCCCAGATCAGAAAGATCATG
CAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCTACCTGGCC
CAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTACATACAGG
TGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCCTCCAGATC
GTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATCAAGCTGCT
AACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTTCGTGGAAA
CCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCCAGGGCTGG
CGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGCGACTTTGT
GCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGCCACCGATG
TGGCTGCCCGCGGACTCGGTGAGTATACGGCAAGCTTTCTAGACCAT

FMO05518.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10077-RC 3634 CG10077-RC 1206..1676 9..479 2355 100 Plus
CG10077-RD 3420 CG10077-RD 1070..1529 9..468 2300 100 Plus
CG10077-RA 3543 CG10077-RA 1193..1652 9..468 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6953762..6954232 479..9 2355 100 Minus
3R 32079331 3R 6004034..6004244 218..8 395 79.1 Minus
X 23542271 X 7929009..7929112 111..8 265 83.7 Minus
Blast to na_te.dros performed on 2014-11-28 20:23:32 has no hits.

FMO05518.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:04 Download gff for FMO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RC 1198..1683 1..488 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:52 Download gff for FMO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RB 11..496 1..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:22 Download gff for FMO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10077-RC 1198..1683 1..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:22 Download gff for FMO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6953754..6954237 1..488 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:04 Download gff for FMO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6946854..6947337 1..488 98   Minus